File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3534ms, 84.36% of 4189ms total Dropped 452 nodes (cum <= 20.95ms) flat flat% sum% cum cum% 0 0% 0% 4181ms 99.81% __libc_start_call_main 0 0% 0% 4181ms 99.81% __libc_start_main_impl 0 0% 0% 4181ms 99.81% _start 0 0% 0% 4178ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4178ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4178ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4178ms 99.74% main 0 0% 0% 4143ms 98.90% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4143ms 98.90% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4143ms 98.90% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4138ms 98.78% AbstractCardiacProblem::Solve 0 0% 0% 4129ms 98.57% AbstractDynamicLinearPdeSolver::Solve 2ms 0.048% 0.048% 2231ms 53.26% LinearSystem::Solve 0 0% 0.048% 2031ms 48.48% KSPSolve 9ms 0.21% 0.26% 2031ms 48.48% KSPSolve_Private 3ms 0.072% 0.33% 1860ms 44.40% KSPSolve_SYMMLQ 2ms 0.048% 0.38% 1216ms 29.03% AbstractCardiacTissue::SolveCellSystems 10ms 0.24% 0.62% 1194ms 28.50% MatMult 1ms 0.024% 0.64% 1165ms 27.81% MatMult_SeqAIJ 1147ms 27.38% 28.03% 1165ms 27.81% MatMult_SeqAIJ_Inode (inline) 2ms 0.048% 28.07% 736ms 17.57% PCApply 0 0% 28.07% 724ms 17.28% PCApply_BJacobi_Singleblock 7ms 0.17% 28.24% 681ms 16.26% AbstractCardiacCell::ComputeExceptVoltage 0 0% 28.24% 593ms 14.16% KSPSolve_PREONLY (partial-inline) 8ms 0.19% 28.43% 579ms 13.82% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.024% 28.46% 559ms 13.34% PCApply_ICC 2ms 0.048% 28.50% 558ms 13.32% MatSolve 0 0% 28.50% 554ms 13.23% KSP_PCApply.lto_priv.18 553ms 13.20% 41.70% 554ms 13.23% MatSolve_SeqSBAIJ_1_NaturalOrdering 74ms 1.77% 43.47% 544ms 12.99% BidomainSolver::SetupLinearSystem 37ms 0.88% 44.35% 501ms 11.96% EulerIvpOdeSolver::CalculateNextYValue 171ms 4.08% 48.44% 458ms 10.93% CellLuoRudy1991FromCellML::EvaluateYDerivatives 14ms 0.33% 48.77% 424ms 10.12% AbstractCardiacTissue::UpdateCaches (inline) 138ms 3.29% 52.06% 399ms 9.52% CellLuoRudy1991FromCellML::GetIIonic 156ms 3.72% 55.79% 374ms 8.93% __GI___exp 0 0% 55.79% 231ms 5.51% VecDuplicate 0 0% 55.79% 229ms 5.47% KSPConvergedDefault 0 0% 55.79% 227ms 5.42% KSP_PCApply (partial-inline) 193ms 4.61% 60.40% 209ms 4.99% __ieee754_exp_fma 6ms 0.14% 60.54% 185ms 4.42% VecDuplicate_MPI 12ms 0.29% 60.83% 155ms 3.70% VecCopy 1ms 0.024% 60.85% 147ms 3.51% std::pow (inline) 11ms 0.26% 61.11% 146ms 3.49% __pow 15ms 0.36% 61.47% 135ms 3.22% __ieee754_pow_fma 1ms 0.024% 61.49% 132ms 3.15% AbstractBidomainSolver::FinaliseLinearSystem 35ms 0.84% 62.33% 131ms 3.13% AbstractBidomainSolver::CheckCompatibilityCondition 33ms 0.79% 63.12% 131ms 3.13% MPI_Wtime 2ms 0.048% 63.17% 116ms 2.77% MatNullSpaceRemove 5ms 0.12% 63.28% 105ms 2.51% VecCreate_MPI_Private (partial-inline) 22ms 0.53% 63.81% 98ms 2.34% PetscLogEventBeginDefault 3ms 0.072% 63.88% 98ms 2.34% __GI___clock_gettime 95ms 2.27% 66.15% 95ms 2.27% [[vdso]] 18ms 0.43% 66.58% 94ms 2.24% PetscMallocA 13ms 0.31% 66.89% 90ms 2.15% PetscLogEventEndDefault 40ms 0.95% 67.84% 87ms 2.08% CellLuoRudy1991FromCellML::VerifyStateVariables 4ms 0.095% 67.94% 86ms 2.05% VecCreate 4ms 0.095% 68.04% 85ms 2.03% VecNorm 1ms 0.024% 68.06% 84ms 2.01% VecMDot 11ms 0.26% 68.32% 83ms 1.98% VecMXDot_Private 0 0% 68.32% 77ms 1.84% PetscMemcpy (inline) 3ms 0.072% 68.39% 76ms 1.81% PetscMallocAlign (partial-inline) 72ms 1.72% 70.11% 72ms 1.72% DistributedVector::Iterator::operator!= 71ms 1.69% 71.81% 71ms 1.69% __memcpy_avx_unaligned_erms 0 0% 71.81% 70ms 1.67% VecCopy_Seq (partial-inline) 0 0% 71.81% 68ms 1.62% VecNorm_Seq 0 0% 71.81% 63ms 1.50% VecNorm_MPI 0 0% 71.81% 63ms 1.50% VecNorm_MPI_Default.constprop.0 1ms 0.024% 71.83% 61ms 1.46% PetscTimeSubtract (inline) 57ms 1.36% 73.19% 57ms 1.36% dasum_ 55ms 1.31% 74.50% 56ms 1.34% exp_inline (inline) 56ms 1.34% 75.84% 56ms 1.34% log_inline (inline) 5ms 0.12% 75.96% 52ms 1.24% VecStashCreate_Private 45ms 1.07% 77.04% 48ms 1.15% VecMDot_Seq 3ms 0.072% 77.11% 46ms 1.10% PetscHeaderCreate_Private 0 0% 77.11% 46ms 1.10% PetscMemzero (inline) 2ms 0.048% 77.15% 46ms 1.10% VecDuplicate_Seq 46ms 1.10% 78.25% 46ms 1.10% __memset_avx2_unaligned_erms 13ms 0.31% 78.56% 39ms 0.93% PetscOptionsFindPair 7ms 0.17% 78.73% 38ms 0.91% __GI___libc_malloc 0 0% 78.73% 37ms 0.88% __posix_memalign 36ms 0.86% 79.59% 36ms 0.86% ddot_ 4ms 0.095% 79.68% 34ms 0.81% PMPI_Comm_get_attr 0 0% 79.68% 33ms 0.79% VecMDot_MPI 3ms 0.072% 79.76% 33ms 0.79% VecMXDot_MPI_Default (inline) 16ms 0.38% 80.14% 31ms 0.74% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 31ms 0.74% 80.88% 31ms 0.74% [libchaste_heart.so] 0 0% 80.88% 30ms 0.72% CxxTest::RealWorldDescription::setUp 30ms 0.72% 81.59% 30ms 0.72% DistributedVector::Stripe::operator[] (inline) 0 0% 81.59% 30ms 0.72% PMPI_Init_thread 0 0% 81.59% 30ms 0.72% PetscInitialize 0 0% 81.59% 30ms 0.72% PetscSetup::setUpWorld 0 0% 81.59% 30ms 0.72% PetscSetupUtils::CommonSetup 0 0% 81.59% 30ms 0.72% PetscSetupUtils::InitialisePetsc 18ms 0.43% 82.02% 30ms 0.72% TimeStepper::TimeStepper 1ms 0.024% 82.05% 30ms 0.72% VecMAXPY 13ms 0.31% 82.36% 30ms 0.72% ompi_attr_get_c 0 0% 82.36% 30ms 0.72% ompi_mpi_init 2ms 0.048% 82.41% 29ms 0.69% VecDot 5ms 0.12% 82.53% 29ms 0.69% VecSet 0 0% 82.53% 28ms 0.67% VecAXPY 1ms 0.024% 82.55% 27ms 0.64% VecDestroy 1ms 0.024% 82.57% 26ms 0.62% VecSetType 1ms 0.024% 82.60% 25ms 0.6% 17ms 0.41% 83.00% 25ms 0.6% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 2ms 0.048% 83.05% 25ms 0.6% PetscOptionsGetIntArray 0 0% 83.05% 25ms 0.6% VecDot_Seq 0 0% 83.05% 25ms 0.6% VecXDot_Seq_Private.constprop.0 13ms 0.31% 83.36% 24ms 0.57% top12 (inline) 5ms 0.12% 83.48% 23ms 0.55% kh_get_HO (inline) 18ms 0.43% 83.91% 22ms 0.53% AbstractOneStepIvpOdeSolver::Solve 19ms 0.45% 84.36% 22ms 0.53% VecMAXPY_Seq 0 0% 84.36% 22ms 0.53% orte_init