File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108067ms, 91.66% of 117896ms total Dropped 1103 nodes (cum <= 589.48ms) flat flat% sum% cum cum% 0 0% 0% 117879ms 100% __libc_start_call_main 0 0% 0% 117879ms 100% __libc_start_main_impl 0 0% 0% 117879ms 100% _start 0 0% 0% 117876ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 117876ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 117876ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 117876ms 100% main 0 0% 0% 117841ms 100% AbstractConvergenceTester::Converge 0 0% 0% 117841ms 100% CxxTest::RealTestDescription::run 0 0% 0% 117841ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 117841ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 117841ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 117841ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0017% 0.0017% 116608ms 98.91% AbstractCardiacProblem::Solve 11ms 0.0093% 0.011% 115828ms 98.25% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0059% 0.017% 64523ms 54.73% LinearSystem::Solve 0 0% 0.017% 64037ms 54.32% KSPSolve 14ms 0.012% 0.029% 64037ms 54.32% KSPSolve_Private 9ms 0.0076% 0.036% 63642ms 53.98% KSPSolve_SYMMLQ 176ms 0.15% 0.19% 42561ms 36.10% AbstractCardiacTissue::SolveCellSystems 5ms 0.0042% 0.19% 36148ms 30.66% PCApply 2ms 0.0017% 0.19% 36139ms 30.65% PCApply_BJacobi_Singleblock 0 0% 0.19% 33833ms 28.70% KSPSolve_PREONLY (partial-inline) 1348ms 1.14% 1.34% 32752ms 27.78% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 1.34% 32677ms 27.72% MatSolve 0 0% 1.34% 32677ms 27.72% PCApply_ICC 32171ms 27.29% 28.62% 32675ms 27.72% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 4ms 0.0034% 28.63% 31229ms 26.49% KSP_PCApply.lto_priv.18 6924ms 5.87% 34.50% 28351ms 24.05% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.0051% 34.51% 21358ms 18.12% MatMult 203ms 0.17% 34.68% 21352ms 18.11% MatMult_SeqAIJ (partial-inline) 20775ms 17.62% 52.30% 21352ms 18.11% MatMult_SeqAIJ_Inode (inline) 1916ms 1.63% 53.92% 14737ms 12.50% CardiacNewtonSolver::Solve 421ms 0.36% 54.28% 8966ms 7.61% AbstractCardiacTissue::UpdateCaches (inline) 4350ms 3.69% 57.97% 8645ms 7.33% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2007ms 1.70% 59.67% 8342ms 7.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1179ms 1.00% 60.67% 7661ms 6.50% BidomainSolver::SetupLinearSystem 1313ms 1.11% 61.79% 7454ms 6.32% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00085% 61.79% 7031ms 5.96% KSP_PCApply (partial-inline) 4ms 0.0034% 61.79% 6442ms 5.46% KSPConvergedDefault 5883ms 4.99% 66.78% 5883ms 4.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 4000ms 3.39% 70.17% 4036ms 3.42% __ieee754_log_fma 0 0% 70.17% 3770ms 3.20% boost::numeric::ublas::norm_inf (inline) 2547ms 2.16% 72.33% 3770ms 3.20% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.33% 3770ms 3.20% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.33% 3770ms 3.20% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 4ms 0.0034% 72.34% 3387ms 2.87% MatNullSpaceRemove 3324ms 2.82% 75.16% 3324ms 2.82% __memcpy_avx_unaligned_erms 0 0% 75.16% 3295ms 2.79% PetscMemcpy (inline) 36ms 0.031% 75.19% 3141ms 2.66% std::pow (inline) 386ms 0.33% 75.52% 3094ms 2.62% __pow 1714ms 1.45% 76.97% 2877ms 2.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 18ms 0.015% 76.98% 2829ms 2.40% VecCopy 6ms 0.0051% 76.99% 2808ms 2.38% VecCopy_Seq (partial-inline) 2716ms 2.30% 79.29% 2716ms 2.30% ddot_ 361ms 0.31% 79.60% 2692ms 2.28% __ieee754_pow_fma 19ms 0.016% 79.62% 2354ms 2.00% VecAXPY 8ms 0.0068% 79.62% 2335ms 1.98% VecAXPY_Seq 2315ms 1.96% 81.59% 2315ms 1.96% daxpy_ 5ms 0.0042% 81.59% 2178ms 1.85% VecDot 1ms 0.00085% 81.59% 2173ms 1.84% VecDot_Seq 3ms 0.0025% 81.59% 2172ms 1.84% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.60% 2051ms 1.74% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00085% 81.60% 1878ms 1.59% VecMDot 11ms 0.0093% 81.61% 1877ms 1.59% VecMXDot_Private 1855ms 1.57% 83.18% 1861ms 1.58% VecMDot_Seq 36ms 0.031% 83.21% 1693ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1546ms 1.31% 84.52% 1605ms 1.36% exp_inline (inline) 4ms 0.0034% 84.52% 1505ms 1.28% VecMAXPY 1494ms 1.27% 85.79% 1501ms 1.27% VecMAXPY_Seq 0 0% 85.79% 1403ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 85.79% 1153ms 0.98% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 85.79% 1153ms 0.98% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 85.79% 1153ms 0.98% boost_numeric_ublas_abs (inline) 1153ms 0.98% 86.77% 1153ms 0.98% std::abs (inline) 5ms 0.0042% 86.77% 1098ms 0.93% boost::numeric::ublas::matrix_assign (inline) 211ms 0.18% 86.95% 1086ms 0.92% boost::numeric::ublas::indexing_matrix_assign 1084ms 0.92% 87.87% 1084ms 0.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 855ms 0.73% 88.60% 1083ms 0.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.60% 1081ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.60% 1081ms 0.92% CuboidMeshConstructor::Construct 2ms 0.0017% 88.60% 1081ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 1033ms 0.88% 89.48% 1033ms 0.88% __memset_avx2_unaligned_erms 0 0% 89.48% 991ms 0.84% Element::Element 7ms 0.0059% 89.48% 980ms 0.83% AbstractTetrahedralElement::CalculateJacobian 0 0% 89.48% 918ms 0.78% AbstractTetrahedralElement::AbstractTetrahedralElement 1ms 0.00085% 89.48% 877ms 0.74% VecDuplicate 3ms 0.0025% 89.48% 866ms 0.73% BidomainAssembler::ComputeMatrixTerm 5ms 0.0042% 89.49% 844ms 0.72% VecScale 8ms 0.0068% 89.50% 841ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 2ms 0.0017% 89.50% 839ms 0.71% VecScale_Seq 834ms 0.71% 90.20% 834ms 0.71% dscal_ 827ms 0.7% 90.91% 827ms 0.7% [libchaste_heart.so] 3ms 0.0025% 90.91% 786ms 0.67% VecNorm 2ms 0.0017% 90.91% 774ms 0.66% VecNorm_Seq 0 0% 90.91% 766ms 0.65% AbstractBidomainSolver::FinaliseLinearSystem 184ms 0.16% 91.07% 765ms 0.65% AbstractBidomainSolver::CheckCompatibilityCondition 12ms 0.01% 91.08% 728ms 0.62% PetscMallocA 2ms 0.0017% 91.08% 718ms 0.61% BidomainProblem::WriteOneStep 5ms 0.0042% 91.08% 716ms 0.61% PetscMallocAlign 684ms 0.58% 91.66% 684ms 0.58% log_inline (inline) 0 0% 91.66% 648ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)