File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3795ms, 87.71% of 4327ms total Dropped 399 nodes (cum <= 21.64ms) flat flat% sum% cum cum% 0 0% 0% 4317ms 99.77% __libc_start_call_main 0 0% 0% 4317ms 99.77% __libc_start_main_impl 0 0% 0% 4317ms 99.77% _start 0 0% 0% 4314ms 99.70% main 0 0% 0% 4272ms 98.73% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.023% 0.023% 4264ms 98.54% AbstractCardiacProblem::Solve 3ms 0.069% 0.092% 4253ms 98.29% AbstractDynamicLinearPdeSolver::Solve 1ms 0.023% 0.12% 1989ms 45.97% LinearSystem::Solve 1ms 0.023% 0.14% 1944ms 44.93% KSPSolve 6ms 0.14% 0.28% 1944ms 44.93% KSPSolve_Private 0 0% 0.28% 1907ms 44.07% KSPSolve_CG 21ms 0.49% 0.76% 1898ms 43.86% AbstractCardiacTissue::SolveCellSystems 36ms 0.83% 1.59% 1297ms 29.97% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 6ms 0.14% 1.73% 1206ms 27.87% PCApply 1ms 0.023% 1.76% 1192ms 27.55% PCApply_BJacobi_Singleblock 463ms 10.70% 12.46% 1167ms 26.97% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 1ms 0.023% 12.48% 1036ms 23.94% KSPSolve_PREONLY (partial-inline) 0 0% 12.48% 970ms 22.42% KSP_PCApply.lto_priv.7 3ms 0.069% 12.55% 966ms 22.32% MatSolve 0 0% 12.55% 966ms 22.32% PCApply_ICC 954ms 22.05% 34.60% 957ms 22.12% MatSolve_SeqSBAIJ_1_NaturalOrdering 4ms 0.092% 34.69% 551ms 12.73% MatMult 13ms 0.3% 34.99% 531ms 12.27% MatMult_SeqAIJ (partial-inline) 516ms 11.93% 46.91% 530ms 12.25% MatMult_SeqAIJ_Inode (inline) 291ms 6.73% 53.64% 506ms 11.69% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 294ms 6.79% 60.43% 482ms 11.14% CardiacNewtonSolver::Solve 1ms 0.023% 60.46% 349ms 8.07% KSP_PCApply (partial-inline) 3ms 0.069% 60.53% 338ms 7.81% KSPConvergedDefault 77ms 1.78% 62.31% 309ms 7.14% BidomainSolver::SetupLinearSystem 29ms 0.67% 62.98% 237ms 5.48% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 63ms 1.46% 64.43% 208ms 4.81% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 1ms 0.023% 64.46% 170ms 3.93% MatNullSpaceRemove 15ms 0.35% 64.80% 153ms 3.54% __pow 138ms 3.19% 67.99% 142ms 3.28% __ieee754_log_fma 21ms 0.49% 68.48% 137ms 3.17% __ieee754_pow_fma 52ms 1.20% 69.68% 135ms 3.12% __GI___exp 134ms 3.10% 72.78% 134ms 3.10% ddot_ 0 0% 72.78% 111ms 2.57% VecMDot 11ms 0.25% 73.03% 111ms 2.57% VecMXDot_Private 22ms 0.51% 73.54% 102ms 2.36% MPI_Wtime 1ms 0.023% 73.56% 92ms 2.13% VecTDot 64ms 1.48% 75.04% 90ms 2.08% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 65ms 1.50% 76.54% 89ms 2.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 82ms 1.90% 78.44% 85ms 1.96% exp_inline (inline) 0 0% 78.44% 84ms 1.94% VecNorm 1ms 0.023% 78.46% 80ms 1.85% __GI___clock_gettime 79ms 1.83% 80.29% 79ms 1.83% [[vdso]] 0 0% 80.29% 78ms 1.80% VecDuplicate 0 0% 80.29% 78ms 1.80% VecTDot_Seq 0 0% 80.29% 78ms 1.80% VecXDot_Seq_Private.constprop.0 75ms 1.73% 82.02% 75ms 1.73% VecMDot_Seq 15ms 0.35% 82.37% 72ms 1.66% PetscLogEventEndDefault 1ms 0.023% 82.39% 72ms 1.66% VecNorm_Seq 12ms 0.28% 82.67% 68ms 1.57% PetscLogEventBeginDefault 43ms 0.99% 83.66% 59ms 1.36% __ieee754_exp_fma 5ms 0.12% 83.78% 58ms 1.34% VecMAXPY 1ms 0.023% 83.80% 52ms 1.20% VecDestroy 6ms 0.14% 83.94% 47ms 1.09% PetscMallocA 0 0% 83.94% 44ms 1.02% PetscTimeSubtract (inline) 20ms 0.46% 84.40% 43ms 0.99% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 84.40% 43ms 0.99% AbstractBidomainSolver::FinaliseLinearSystem 4ms 0.092% 84.49% 41ms 0.95% PetscMallocAlign 1ms 0.023% 84.52% 40ms 0.92% VecDuplicate_Seq 0 0% 84.52% 38ms 0.88% CxxTest::RealWorldDescription::setUp 0 0% 84.52% 38ms 0.88% PetscInitialize 0 0% 84.52% 38ms 0.88% PetscSetup::setUpWorld 0 0% 84.52% 38ms 0.88% PetscSetupUtils::CommonSetup 0 0% 84.52% 38ms 0.88% PetscSetupUtils::InitialisePetsc 1ms 0.023% 84.54% 38ms 0.88% VecDuplicate_MPI 0 0% 84.54% 37ms 0.86% PMPI_Init_thread 37ms 0.86% 85.39% 37ms 0.86% [libchaste_heart.so] 0 0% 85.39% 37ms 0.86% ompi_mpi_init 1ms 0.023% 85.42% 35ms 0.81% VecCreate 29ms 0.67% 86.09% 31ms 0.72% VecMAXPY_Seq 0 0% 86.09% 30ms 0.69% 28ms 0.65% 86.73% 28ms 0.65% log_inline (inline) 6ms 0.14% 86.87% 27ms 0.62% AbstractCardiacCell::SetVoltage 27ms 0.62% 87.50% 27ms 0.62% [libm.so.6] 2ms 0.046% 87.54% 26ms 0.6% PetscHeaderDestroy_Private 4ms 0.092% 87.64% 26ms 0.6% VecCopy 0 0% 87.64% 26ms 0.6% VecNorm_MPI 0 0% 87.64% 26ms 0.6% VecNorm_MPI_Default.constprop.0 1ms 0.023% 87.66% 24ms 0.55% VecAXPY 0 0% 87.66% 23ms 0.53% orte_init 0 0% 87.66% 22ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.046% 87.71% 22ms 0.51% __posix_memalign