File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3711ms, 87.61% of 4236ms total Dropped 412 nodes (cum <= 21.18ms) flat flat% sum% cum cum% 0 0% 0% 4226ms 99.76% __libc_start_call_main 0 0% 0% 4226ms 99.76% __libc_start_main_impl 0 0% 0% 4226ms 99.76% _start 0 0% 0% 4223ms 99.69% main 0 0% 0% 4185ms 98.80% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4176ms 98.58% AbstractCardiacProblem::Solve 1ms 0.024% 0.047% 4156ms 98.11% AbstractDynamicLinearPdeSolver::Solve 44ms 1.04% 1.09% 2221ms 52.43% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 1.13% 1583ms 37.37% LinearSystem::Solve 0 0% 1.13% 1525ms 36.00% KSPSolve 5ms 0.12% 1.25% 1525ms 36.00% KSPSolve_Private 0 0% 1.25% 1469ms 34.68% KSPSolve_SYMMLQ 37ms 0.87% 2.12% 1236ms 29.18% AbstractCardiacCell::ComputeExceptVoltage 29ms 0.68% 2.81% 1049ms 24.76% AbstractOneStepIvpOdeSolver::InternalSolve 56ms 1.32% 4.13% 897ms 21.18% EulerIvpOdeSolver::CalculateNextYValue 0 0% 4.13% 860ms 20.30% PCApply 0 0% 4.13% 848ms 20.02% PCApply_BJacobi_Singleblock 246ms 5.81% 9.94% 838ms 19.78% CellLuoRudy1991FromCellML::EvaluateYDerivatives 364ms 8.59% 18.53% 762ms 17.99% __GI___exp 265ms 6.26% 24.79% 740ms 17.47% CellLuoRudy1991FromCellML::GetIIonic 0 0% 24.79% 722ms 17.04% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 24.81% 685ms 16.17% MatSolve 0 0% 24.81% 685ms 16.17% PCApply_ICC 675ms 15.93% 40.75% 680ms 16.05% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.75% 650ms 15.34% KSP_PCApply.lto_priv.18 5ms 0.12% 40.86% 465ms 10.98% MatMult 13ms 0.31% 41.17% 454ms 10.72% MatMult_SeqAIJ (partial-inline) 439ms 10.36% 51.53% 454ms 10.72% MatMult_SeqAIJ_Inode (inline) 319ms 7.53% 59.07% 382ms 9.02% __ieee754_exp_fma 1ms 0.024% 59.09% 305ms 7.20% KSPConvergedDefault 70ms 1.65% 60.74% 300ms 7.08% BidomainSolver::SetupLinearSystem 0 0% 60.74% 276ms 6.52% KSP_PCApply (partial-inline) 22ms 0.52% 61.26% 245ms 5.78% __pow 22ms 0.52% 61.78% 223ms 5.26% __ieee754_pow_fma 87ms 2.05% 63.83% 117ms 2.76% CellLuoRudy1991FromCellML::VerifyStateVariables 3ms 0.071% 63.90% 116ms 2.74% MatNullSpaceRemove 26ms 0.61% 64.52% 103ms 2.43% MPI_Wtime 101ms 2.38% 66.90% 101ms 2.38% log_inline (inline) 90ms 2.12% 69.03% 92ms 2.17% exp_inline (inline) 0 0% 69.03% 85ms 2.01% VecDuplicate 81ms 1.91% 70.94% 81ms 1.91% ddot_ 2ms 0.047% 70.99% 77ms 1.82% __GI___clock_gettime 75ms 1.77% 72.76% 75ms 1.77% [[vdso]] 9ms 0.21% 72.97% 70ms 1.65% PetscLogEventBeginDefault 6ms 0.14% 73.11% 68ms 1.61% VecCopy 11ms 0.26% 73.37% 66ms 1.56% PetscLogEventEndDefault 0 0% 73.37% 65ms 1.53% VecMDot 2ms 0.047% 73.42% 65ms 1.53% VecMXDot_Private 2ms 0.047% 73.47% 64ms 1.51% VecDot 33ms 0.78% 74.24% 63ms 1.49% TimeStepper::TimeStepper 1ms 0.024% 74.27% 62ms 1.46% VecNorm 2ms 0.047% 74.32% 56ms 1.32% VecDuplicate_MPI 54ms 1.27% 75.59% 54ms 1.27% [libchaste_heart.so] 0 0% 75.59% 52ms 1.23% VecNorm_Seq 7ms 0.17% 75.76% 49ms 1.16% VecAXPY 0 0% 75.76% 49ms 1.16% VecDestroy 0 0% 75.76% 48ms 1.13% VecDot_Seq 3ms 0.071% 75.83% 48ms 1.13% VecMAXPY 0 0% 75.83% 48ms 1.13% VecXDot_Seq_Private.constprop.0 38ms 0.9% 76.72% 48ms 1.13% top12 (inline) 11ms 0.26% 76.98% 45ms 1.06% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 76.98% 45ms 1.06% AbstractBidomainSolver::FinaliseLinearSystem 45ms 1.06% 78.05% 45ms 1.06% __memcpy_avx_unaligned_erms 42ms 0.99% 79.04% 44ms 1.04% VecMDot_Seq 32ms 0.76% 79.79% 42ms 0.99% AbstractOneStepIvpOdeSolver::Solve 0 0% 79.79% 40ms 0.94% PetscMemcpy (inline) 1ms 0.024% 79.82% 40ms 0.94% VecCreate 0 0% 79.82% 40ms 0.94% VecNorm_MPI 0 0% 79.82% 40ms 0.94% VecNorm_MPI_Default.constprop.0 33ms 0.78% 80.59% 39ms 0.92% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 38ms 0.9% 81.49% 38ms 0.9% AbstractParameterisedSystem::SetAnyVariable 36ms 0.85% 82.34% 36ms 0.85% TimeStepper::CalculateNextTime 4ms 0.094% 82.44% 35ms 0.83% PetscMallocA 35ms 0.83% 83.26% 35ms 0.83% asuint64 (inline) 0 0% 83.26% 34ms 0.8% CxxTest::RealWorldDescription::setUp 0 0% 83.26% 34ms 0.8% PMPI_Init_thread 0 0% 83.26% 34ms 0.8% PetscInitialize 0 0% 83.26% 34ms 0.8% PetscSetup::setUpWorld 0 0% 83.26% 34ms 0.8% PetscSetupUtils::CommonSetup 0 0% 83.26% 34ms 0.8% PetscSetupUtils::InitialisePetsc 0 0% 83.26% 34ms 0.8% ompi_mpi_init 2ms 0.047% 83.31% 33ms 0.78% VecCopy_Seq (partial-inline) 16ms 0.38% 83.69% 31ms 0.73% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.071% 83.76% 31ms 0.73% PetscMallocAlign 5ms 0.12% 83.88% 29ms 0.68% VecCreate_MPI_Private 1ms 0.024% 83.90% 29ms 0.68% VecDuplicate_Seq 1ms 0.024% 83.92% 28ms 0.66% 27ms 0.64% 84.56% 27ms 0.64% DistributedVector::Iterator::operator!= 2ms 0.047% 84.61% 27ms 0.64% VecAXPY_Seq 26ms 0.61% 85.22% 26ms 0.61% AbstractParameterisedSystem::GetAnyVariable 8ms 0.19% 85.41% 25ms 0.59% AbstractCardiacCell::SetVoltage 25ms 0.59% 86.00% 25ms 0.59% __ieee754_log_fma 24ms 0.57% 86.57% 24ms 0.57% daxpy_ 15ms 0.35% 86.92% 23ms 0.54% TimeStepper::AdvanceOneTimeStep 1ms 0.024% 86.95% 23ms 0.54% __posix_memalign 0 0% 86.95% 23ms 0.54% orte_init 0 0% 86.95% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 22ms 0.52% 87.46% 22ms 0.52% VecMAXPY_Seq 6ms 0.14% 87.61% 22ms 0.52% __GI___libc_malloc