File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 319ms, 89.11% of 358ms total Dropped 178 nodes (cum <= 1.79ms) flat flat% sum% cum cum% 0 0% 0% 348ms 97.21% __libc_start_call_main 0 0% 0% 348ms 97.21% __libc_start_main_impl 0 0% 0% 348ms 97.21% _start 0 0% 0% 345ms 96.37% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 345ms 96.37% CxxTest::TestRunner::runAllTests 0 0% 0% 345ms 96.37% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 345ms 96.37% main 0 0% 0% 316ms 88.27% CxxTest::RealTestDescription::run 0 0% 0% 316ms 88.27% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 316ms 88.27% CxxTest::TestRunner::runTest (inline) 0 0% 0% 316ms 88.27% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 316ms 88.27% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 312ms 87.15% AbstractCardiacProblem::Solve 0 0% 0% 312ms 87.15% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 274ms 76.54% LinearSystem::Solve 0 0% 0% 271ms 75.70% KSPSolve 0 0% 0% 271ms 75.70% KSPSolve_CG 0 0% 0% 271ms 75.70% KSPSolve_Private 0 0% 0% 154ms 43.02% KSP_PCApply.lto_priv.7 1ms 0.28% 0.28% 144ms 40.22% PCApply 0 0% 0.28% 143ms 39.94% PCApply_BJacobi_Singleblock 0 0% 0.28% 117ms 32.68% KSPSolve_PREONLY (partial-inline) 0 0% 0.28% 109ms 30.45% MatSolve 109ms 30.45% 30.73% 109ms 30.45% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 30.73% 109ms 30.45% PCApply_ICC 1ms 0.28% 31.01% 55ms 15.36% MatMult 4ms 1.12% 32.12% 54ms 15.08% MatMult_SeqAIJ (partial-inline) 49ms 13.69% 45.81% 52ms 14.53% MatMult_SeqAIJ_Inode (inline) 40ms 11.17% 56.98% 40ms 11.17% ddot_ 0 0% 56.98% 34ms 9.50% AbstractCardiacTissue::SolveCellSystems 0 0% 56.98% 33ms 9.22% MatNullSpaceRemove 0 0% 56.98% 32ms 8.94% VecTDot 0 0% 56.98% 32ms 8.94% VecTDot_Seq 0 0% 56.98% 32ms 8.94% VecXDot_Seq_Private.constprop.0 0 0% 56.98% 29ms 8.10% CxxTest::RealWorldDescription::setUp 0 0% 56.98% 29ms 8.10% PMPI_Init_thread 0 0% 56.98% 29ms 8.10% PetscInitialize 0 0% 56.98% 29ms 8.10% PetscSetup::setUpWorld 0 0% 56.98% 29ms 8.10% PetscSetupUtils::CommonSetup 0 0% 56.98% 29ms 8.10% PetscSetupUtils::InitialisePetsc 0 0% 56.98% 29ms 8.10% ompi_mpi_init 0 0% 56.98% 23ms 6.42% 1ms 0.28% 57.26% 22ms 6.15% AbstractCardiacCell::ComputeExceptVoltage 1ms 0.28% 57.54% 19ms 5.31% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 57.54% 19ms 5.31% orte_init 0 0% 57.54% 18ms 5.03% VecMDot 18ms 5.03% 62.57% 18ms 5.03% VecMDot_Seq 0 0% 62.57% 18ms 5.03% VecMXDot_Private 0 0% 62.57% 15ms 4.19% VecMAXPY 15ms 4.19% 66.76% 15ms 4.19% VecMAXPY_Seq 1ms 0.28% 67.04% 14ms 3.91% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.84% 67.88% 13ms 3.63% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 67.88% 13ms 3.63% mca_base_framework_components_register 0 0% 67.88% 13ms 3.63% mca_base_framework_open 0 0% 67.88% 13ms 3.63% mca_base_framework_register 0 0% 67.88% 12ms 3.35% hwloc_linux_get_tid_last_cpu_location 0 0% 67.88% 12ms 3.35% hwloc_topology_load 5ms 1.40% 69.27% 11ms 3.07% __GI___exp 0 0% 69.27% 11ms 3.07% __GI__dl_catch_exception 0 0% 69.27% 11ms 3.07% ___dlopen 0 0% 69.27% 11ms 3.07% _dl_catch_error 0 0% 69.27% 11ms 3.07% _dl_open 0 0% 69.27% 11ms 3.07% _dlerror_run 0 0% 69.27% 11ms 3.07% dl_open_worker 0 0% 69.27% 11ms 3.07% dlopen_doit 0 0% 69.27% 11ms 3.07% dlopen_implementation (inline) 0 0% 69.27% 11ms 3.07% mca_base_component_find 0 0% 69.27% 11ms 3.07% mca_base_component_repository_open 0 0% 69.27% 11ms 3.07% opal_stackframe_output 0 0% 69.27% 10ms 2.79% KSP_PCApply (partial-inline) 0 0% 69.27% 10ms 2.79% VecAXPY 0 0% 69.27% 10ms 2.79% VecAXPY_Seq 0 0% 69.27% 10ms 2.79% VecAYPX 10ms 2.79% 72.07% 10ms 2.79% VecAYPX_Seq 10ms 2.79% 74.86% 10ms 2.79% daxpy_ 0 0% 74.86% 9ms 2.51% AbstractCardiacTissue::UpdateCaches (inline) 3ms 0.84% 75.70% 9ms 2.51% CellLuoRudy1991FromCellML::GetIIonic 0 0% 75.70% 9ms 2.51% VecNorm 0 0% 75.70% 9ms 2.51% VecNorm_Seq 0 0% 75.70% 9ms 2.51% _dl_init 0 0% 75.70% 9ms 2.51% call_init (inline) 0 0% 75.70% 9ms 2.51% dl_open_worker_begin 0 0% 75.70% 8ms 2.23% VecDuplicate 8ms 2.23% 77.93% 8ms 2.23% __GI___libc_read 0 0% 77.93% 7ms 1.96% _dl_start_user 0 0% 77.93% 6ms 1.68% VecDuplicate_Seq 0 0% 77.93% 6ms 1.68% _dl_lookup_symbol_x 1ms 0.28% 78.21% 6ms 1.68% boost::serialization::singleton::get_instance 0 0% 78.21% 6ms 1.68% opal_hwloc_base_get_topology 0 0% 78.21% 6ms 1.68% orte_ess_base_proc_binding 0 0% 78.21% 5ms 1.40% VecCreate_Seq 0 0% 78.21% 5ms 1.40% VecSetType 3ms 0.84% 79.05% 5ms 1.40% __GI___libc_malloc 5ms 1.40% 80.45% 5ms 1.40% __ieee754_exp_fma 1ms 0.28% 80.73% 5ms 1.40% _dl_map_object 0 0% 80.73% 5ms 1.40% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 80.73% 4ms 1.12% AbstractCardiacProblem::Initialise 0 0% 80.73% 4ms 1.12% PetscMallocA 0 0% 80.73% 4ms 1.12% PetscMallocAlign (partial-inline) 0 0% 80.73% 4ms 1.12% _dl_open_relocate_one_object (inline) 0 0% 80.73% 4ms 1.12% _dl_relocate_object 4ms 1.12% 81.84% 4ms 1.12% do_lookup_x 0 0% 81.84% 4ms 1.12% elf_dynamic_do_Rela (inline) 0 0% 81.84% 4ms 1.12% elf_machine_rela (inline) 0 0% 81.84% 4ms 1.12% resolve_map (inline) 0 0% 81.84% 3ms 0.84% BidomainSolver::SetupLinearSystem 0 0% 81.84% 3ms 0.84% PetscMemcpy (inline) 0 0% 81.84% 3ms 0.84% PetscMemzero (inline) 0 0% 81.84% 3ms 0.84% VecCopy 0 0% 81.84% 3ms 0.84% VecCopy_Seq (partial-inline) 2ms 0.56% 82.40% 3ms 0.84% VecCreate_Seq_Private (partial-inline) 0 0% 82.40% 3ms 0.84% __GI_exit 0 0% 82.40% 3ms 0.84% __cxa_finalize 0 0% 82.40% 3ms 0.84% __ieee754_pow_fma 3ms 0.84% 83.24% 3ms 0.84% __memcpy_avx512_unaligned_erms 3ms 0.84% 84.08% 3ms 0.84% __memset_avx512_unaligned_erms 0 0% 84.08% 3ms 0.84% __posix_memalign 0 0% 84.08% 3ms 0.84% __pow 0 0% 84.08% 3ms 0.84% __run_exit_handlers 0 0% 84.08% 3ms 0.84% _dl_call_fini 0 0% 84.08% 3ms 0.84% _dl_fini 1ms 0.28% 84.36% 3ms 0.84% _dl_fixup 0 0% 84.36% 3ms 0.84% _dl_runtime_resolve_xsavec 0 0% 84.36% 3ms 0.84% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 84.36% 3ms 0.84% boost::serialization::void_cast_detail::void_caster::recursive_register 0 0% 84.36% 3ms 0.84% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 0 0% 84.36% 3ms 0.84% clone3 0 0% 84.36% 3ms 0.84% mca_base_framework_components_open 0 0% 84.36% 3ms 0.84% mca_topo_base_dist_graph_neighbors_count 0 0% 84.36% 3ms 0.84% start_thread 0 0% 84.36% 3ms 0.84% std::pow (inline) 0 0% 84.36% 2ms 0.56% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 84.36% 2ms 0.56% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.56% 84.92% 2ms 0.56% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 84.92% 2ms 0.56% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 84.92% 2ms 0.56% KSPConvergedDefault 0 0% 84.92% 2ms 0.56% PetscHeaderDestroy_Private 0 0% 84.92% 2ms 0.56% TimeStepper::TimeStepper 0 0% 84.92% 2ms 0.56% VecCreate 0 0% 84.92% 2ms 0.56% VecDestroy 0 0% 84.92% 2ms 0.56% VecDuplicate_MPI 0 0% 84.92% 2ms 0.56% VecSet 0 0% 84.92% 2ms 0.56% VecSet_Seq (partial-inline) 0 0% 84.92% 2ms 0.56% XOpenDisplay 0 0% 84.92% 2ms 0.56% [hwloc_gl.so] 0 0% 84.92% 2ms 0.56% [libxcb.so.1.1.0] 0 0% 84.92% 2ms 0.56% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 84.92% 2ms 0.56% _IO_new_file_underflow 0 0% 84.92% 2ms 0.56% _XConnectXCB 0 0% 84.92% 2ms 0.56% __GI__IO_default_uflow 2ms 0.56% 85.47% 2ms 0.56% __GI___clock_nanosleep 2ms 0.56% 86.03% 2ms 0.56% __GI___libc_free 0 0% 86.03% 2ms 0.56% __GI___nanosleep 2ms 0.56% 86.59% 2ms 0.56% __GI___writev 2ms 0.56% 87.15% 2ms 0.56% __strcmp_evex 0 0% 87.15% 2ms 0.56% _dl_map_object_deps 0 0% 87.15% 2ms 0.56% _dl_map_object_from_fd 2ms 0.56% 87.71% 2ms 0.56% _dl_new_hash (inline) 1ms 0.28% 87.99% 2ms 0.56% boost::archive::detail::basic_serializer_map::erase 0 0% 87.99% 2ms 0.56% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.99% 2ms 0.56% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.99% 2ms 0.56% boost::serialization::singleton::get_mutable_instance (inline) 0 0% 87.99% 2ms 0.56% boost::serialization::typeid_system::extended_type_info_typeid_0::is_equal 0 0% 87.99% 2ms 0.56% event_base_loop 0 0% 87.99% 2ms 0.56% event_del_nolock_ 2ms 0.56% 88.55% 2ms 0.56% exp_inline (inline) 0 0% 88.55% 2ms 0.56% openaux 2ms 0.56% 89.11% 2ms 0.56% strcmp 0 0% 89.11% 2ms 0.56% usleep 0 0% 89.11% 2ms 0.56% xcb_connect_to_display_with_auth_info