File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3688ms, 87.52% of 4214ms total Dropped 418 nodes (cum <= 21.07ms) flat flat% sum% cum cum% 0 0% 0% 4207ms 99.83% __libc_start_call_main 0 0% 0% 4207ms 99.83% __libc_start_main_impl 0 0% 0% 4207ms 99.83% _start 0 0% 0% 4204ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4204ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4204ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4204ms 99.76% main 0 0% 0% 4163ms 98.79% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4163ms 98.79% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4163ms 98.79% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4157ms 98.65% AbstractCardiacProblem::Solve 0 0% 0% 4149ms 98.46% AbstractDynamicLinearPdeSolver::Solve 17ms 0.4% 0.4% 2450ms 58.14% AbstractCardiacTissue::SolveCellSystems 23ms 0.55% 0.95% 1387ms 32.91% AbstractCardiacCell::ComputeExceptVoltage 0 0% 0.95% 1327ms 31.49% LinearSystem::Solve 0 0% 0.95% 1272ms 30.19% KSPSolve 0 0% 0.95% 1272ms 30.19% KSPSolve_Private 1ms 0.024% 0.97% 1223ms 29.02% KSPSolve_SYMMLQ 21ms 0.5% 1.47% 1181ms 28.03% AbstractOneStepIvpOdeSolver::InternalSolve 55ms 1.31% 2.78% 1010ms 23.97% EulerIvpOdeSolver::CalculateNextYValue 295ms 7.00% 9.78% 944ms 22.40% CellLuoRudy1991FromCellML::EvaluateYDerivatives 29ms 0.69% 10.47% 846ms 20.08% AbstractCardiacTissue::UpdateCaches (inline) 394ms 9.35% 19.81% 844ms 20.03% __GI___exp 277ms 6.57% 26.39% 788ms 18.70% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 26.41% 783ms 18.58% PCApply 0 0% 26.41% 777ms 18.44% PCApply_BJacobi_Singleblock 0 0% 26.41% 633ms 15.02% KSPSolve_PREONLY (partial-inline) 0 0% 26.41% 600ms 14.24% MatSolve 0 0% 26.41% 600ms 14.24% PCApply_ICC 594ms 14.10% 40.51% 597ms 14.17% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.51% 595ms 14.12% KSP_PCApply.lto_priv.18 403ms 9.56% 50.07% 430ms 10.20% __ieee754_exp_fma 5ms 0.12% 50.19% 422ms 10.01% MatMult 3ms 0.071% 50.26% 409ms 9.71% MatMult_SeqAIJ 401ms 9.52% 59.78% 409ms 9.71% MatMult_SeqAIJ_Inode (inline) 59ms 1.40% 61.18% 328ms 7.78% BidomainSolver::SetupLinearSystem 5ms 0.12% 61.30% 258ms 6.12% std::pow (inline) 26ms 0.62% 61.91% 253ms 6.00% __pow 1ms 0.024% 61.94% 237ms 5.62% KSPConvergedDefault 0 0% 61.94% 235ms 5.58% KSP_PCApply (partial-inline) 44ms 1.04% 62.98% 227ms 5.39% __ieee754_pow_fma 85ms 2.02% 65.00% 161ms 3.82% CellLuoRudy1991FromCellML::VerifyStateVariables 96ms 2.28% 67.28% 96ms 2.28% log_inline (inline) 1ms 0.024% 67.30% 93ms 2.21% VecDuplicate 24ms 0.57% 67.87% 92ms 2.18% MPI_Wtime 2ms 0.047% 67.92% 91ms 2.16% MatNullSpaceRemove 76ms 1.80% 69.72% 79ms 1.87% exp_inline (inline) 37ms 0.88% 70.60% 69ms 1.64% TimeStepper::TimeStepper 68ms 1.61% 72.21% 68ms 1.61% [[vdso]] 0 0% 72.21% 68ms 1.61% __GI___clock_gettime 12ms 0.28% 72.50% 60ms 1.42% PetscLogEventEndDefault 6ms 0.14% 72.64% 59ms 1.40% VecCopy 54ms 1.28% 73.92% 54ms 1.28% ddot_ 9ms 0.21% 74.13% 53ms 1.26% PetscLogEventBeginDefault 24ms 0.57% 74.70% 52ms 1.23% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 1ms 0.024% 74.73% 50ms 1.19% VecDuplicate_MPI 37ms 0.88% 75.61% 47ms 1.12% AbstractOneStepIvpOdeSolver::Solve 0 0% 75.61% 46ms 1.09% VecMDot 5ms 0.12% 75.72% 46ms 1.09% VecMXDot_Private 3ms 0.071% 75.79% 43ms 1.02% VecMAXPY 43ms 1.02% 76.82% 43ms 1.02% [libchaste_heart.so] 38ms 0.9% 77.72% 42ms 1% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.024% 77.74% 42ms 1% VecDot 1ms 0.024% 77.76% 42ms 1% VecDuplicate_Seq 0 0% 77.76% 42ms 1% VecNorm 12ms 0.28% 78.05% 40ms 0.95% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.05% 40ms 0.95% AbstractBidomainSolver::FinaliseLinearSystem 40ms 0.95% 79.00% 40ms 0.95% TimeStepper::CalculateNextTime 5ms 0.12% 79.12% 38ms 0.9% PetscMallocA 1ms 0.024% 79.14% 38ms 0.9% VecDestroy 0 0% 79.14% 37ms 0.88% CxxTest::RealWorldDescription::setUp 0 0% 79.14% 37ms 0.88% PetscInitialize 0 0% 79.14% 37ms 0.88% PetscSetup::setUpWorld 0 0% 79.14% 37ms 0.88% PetscSetupUtils::CommonSetup 0 0% 79.14% 37ms 0.88% PetscSetupUtils::InitialisePetsc 36ms 0.85% 80.00% 37ms 0.88% __ieee754_log_fma 0 0% 80.00% 36ms 0.85% PMPI_Init_thread 0 0% 80.00% 36ms 0.85% ompi_mpi_init 6ms 0.14% 80.14% 35ms 0.83% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 80.16% 35ms 0.83% VecCreate 0 0% 80.16% 35ms 0.83% VecDot_Seq 0 0% 80.16% 35ms 0.83% VecXDot_Seq_Private.constprop.0 19ms 0.45% 80.61% 35ms 0.83% top12 (inline) 2ms 0.047% 80.66% 34ms 0.81% VecAXPY 0 0% 80.66% 34ms 0.81% VecNorm_Seq 3ms 0.071% 80.73% 33ms 0.78% PetscMallocAlign 24ms 0.57% 81.30% 32ms 0.76% AbstractParameterisedSystem::GetAnyVariable 0 0% 81.30% 32ms 0.76% VecCreate_MPI_Private 32ms 0.76% 82.06% 32ms 0.76% __memcpy_avx_unaligned_erms 31ms 0.74% 82.80% 31ms 0.74% DistributedVector::Iterator::operator!= 29ms 0.69% 83.48% 30ms 0.71% VecMDot_Seq 30ms 0.71% 84.20% 30ms 0.71% std::isinf (inline) 0 0% 84.20% 29ms 0.69% 15ms 0.36% 84.55% 29ms 0.69% AbstractCardiacCell::GetVoltage (partial-inline) 28ms 0.66% 85.22% 28ms 0.66% [libchaste_ode.so] 10ms 0.24% 85.45% 28ms 0.66% std::__cxx11::basic_string::basic_string 0 0% 85.45% 26ms 0.62% PetscMemcpy (inline) 0 0% 85.45% 26ms 0.62% orte_init 16ms 0.38% 85.83% 25ms 0.59% TimeStepper::AdvanceOneTimeStep 0 0% 85.83% 25ms 0.59% VecAXPY_Seq 24ms 0.57% 86.40% 25ms 0.59% VecMAXPY_Seq 25ms 0.59% 87.00% 25ms 0.59% daxpy_ 21ms 0.5% 87.49% 24ms 0.57% AbstractParameterisedSystem::SetAnyVariable 1ms 0.024% 87.52% 24ms 0.57% VecCopy_Seq (partial-inline) 0 0% 87.52% 24ms 0.57% VecNorm_MPI 0 0% 87.52% 24ms 0.57% VecNorm_MPI_Default.constprop.0