File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109197ms, 91.70% of 119087ms total Dropped 1116 nodes (cum <= 595.43ms) flat flat% sum% cum cum% 0 0% 0% 119070ms 100% __libc_start_call_main 0 0% 0% 119070ms 100% __libc_start_main_impl 0 0% 0% 119070ms 100% _start 0 0% 0% 119067ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119067ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119067ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119067ms 100% main 0 0% 0% 119031ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119031ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119031ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119031ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119031ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119031ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0034% 0.0034% 117782ms 98.90% AbstractCardiacProblem::Solve 9ms 0.0076% 0.011% 116977ms 98.23% AbstractDynamicLinearPdeSolver::Solve 6ms 0.005% 0.016% 65350ms 54.88% LinearSystem::Solve 2ms 0.0017% 0.018% 64881ms 54.48% KSPSolve 9ms 0.0076% 0.025% 64880ms 54.48% KSPSolve_Private 16ms 0.013% 0.039% 64497ms 54.16% KSPSolve_SYMMLQ 197ms 0.17% 0.2% 42834ms 35.97% AbstractCardiacTissue::SolveCellSystems 7ms 0.0059% 0.21% 37258ms 31.29% PCApply 0 0% 0.21% 37245ms 31.28% PCApply_BJacobi_Singleblock 1ms 0.00084% 0.21% 34704ms 29.14% KSPSolve_PREONLY (partial-inline) 4ms 0.0034% 0.21% 33552ms 28.17% PCApply_ICC 7ms 0.0059% 0.22% 33548ms 28.17% MatSolve 33038ms 27.74% 27.96% 33541ms 28.17% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1323ms 1.11% 29.07% 32832ms 27.57% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0034% 29.08% 32093ms 26.95% KSP_PCApply.lto_priv.18 6918ms 5.81% 34.89% 28446ms 23.89% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0059% 34.89% 21546ms 18.09% MatMult 293ms 0.25% 35.14% 21539ms 18.09% MatMult_SeqAIJ (partial-inline) 21028ms 17.66% 52.80% 21537ms 18.09% MatMult_SeqAIJ_Inode (inline) 1963ms 1.65% 54.44% 14771ms 12.40% CardiacNewtonSolver::Solve 401ms 0.34% 54.78% 9140ms 7.68% AbstractCardiacTissue::UpdateCaches (inline) 4431ms 3.72% 58.50% 8556ms 7.18% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2070ms 1.74% 60.24% 8540ms 7.17% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1151ms 0.97% 61.21% 7752ms 6.51% BidomainSolver::SetupLinearSystem 1292ms 1.08% 62.29% 7679ms 6.45% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0017% 62.29% 7152ms 6.01% KSP_PCApply (partial-inline) 7ms 0.0059% 62.30% 6535ms 5.49% KSPConvergedDefault 6147ms 5.16% 67.46% 6147ms 5.16% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3837ms 3.22% 70.68% 3887ms 3.26% __ieee754_log_fma 0 0% 70.68% 3812ms 3.20% boost::numeric::ublas::norm_inf (inline) 2562ms 2.15% 72.83% 3812ms 3.20% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.83% 3812ms 3.20% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.83% 3812ms 3.20% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 4ms 0.0034% 72.84% 3319ms 2.79% MatNullSpaceRemove 25ms 0.021% 72.86% 3160ms 2.65% std::pow (inline) 3142ms 2.64% 75.50% 3142ms 2.64% __memcpy_avx_unaligned_erms 383ms 0.32% 75.82% 3117ms 2.62% __pow 0 0% 75.82% 3115ms 2.62% PetscMemcpy (inline) 1821ms 1.53% 77.35% 2912ms 2.45% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 377ms 0.32% 77.66% 2728ms 2.29% __ieee754_pow_fma 17ms 0.014% 77.68% 2637ms 2.21% VecCopy 3ms 0.0025% 77.68% 2616ms 2.20% VecCopy_Seq (partial-inline) 2605ms 2.19% 79.87% 2605ms 2.19% ddot_ 13ms 0.011% 79.88% 2380ms 2.00% VecAXPY 6ms 0.005% 79.88% 2367ms 1.99% VecAXPY_Seq 2346ms 1.97% 81.85% 2346ms 1.97% daxpy_ 5ms 0.0042% 81.86% 2082ms 1.75% VecDot 0 0% 81.86% 2077ms 1.74% VecDot_Seq 0 0% 81.86% 2077ms 1.74% VecXDot_Seq_Private.constprop.0 6ms 0.005% 81.86% 2061ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.86% 1824ms 1.53% VecMDot 12ms 0.01% 81.87% 1824ms 1.53% VecMXDot_Private 1806ms 1.52% 83.39% 1810ms 1.52% VecMDot_Seq 30ms 0.025% 83.42% 1685ms 1.41% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1523ms 1.28% 84.69% 1581ms 1.33% exp_inline (inline) 10ms 0.0084% 84.70% 1491ms 1.25% VecMAXPY 1475ms 1.24% 85.94% 1481ms 1.24% VecMAXPY_Seq 0 0% 85.94% 1412ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 85.94% 1144ms 0.96% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 85.94% 1144ms 0.96% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 85.94% 1144ms 0.96% boost_numeric_ublas_abs (inline) 1144ms 0.96% 86.90% 1144ms 0.96% std::abs (inline) 6ms 0.005% 86.91% 1110ms 0.93% boost::numeric::ublas::matrix_assign (inline) 1102ms 0.93% 87.83% 1102ms 0.93% __memset_avx2_unaligned_erms 0 0% 87.83% 1099ms 0.92% CuboidMeshConstructor::Construct 0 0% 87.83% 1098ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00084% 87.83% 1098ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 218ms 0.18% 88.02% 1098ms 0.92% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.02% 1093ms 0.92% PetscMemzero (inline) 800ms 0.67% 88.69% 1062ms 0.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1031ms 0.87% 89.55% 1031ms 0.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1ms 0.00084% 89.55% 1020ms 0.86% Element::Element 2ms 0.0017% 89.56% 998ms 0.84% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.56% 959ms 0.81% AbstractTetrahedralElement::AbstractTetrahedralElement 3ms 0.0025% 89.56% 920ms 0.77% VecDuplicate 1ms 0.00084% 89.56% 866ms 0.73% BidomainAssembler::ComputeMatrixTerm 8ms 0.0067% 89.57% 843ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 4ms 0.0034% 89.57% 809ms 0.68% VecScale 1ms 0.00084% 89.57% 805ms 0.68% VecScale_Seq 805ms 0.68% 90.25% 805ms 0.68% [libchaste_heart.so] 797ms 0.67% 90.92% 797ms 0.67% dscal_ 12ms 0.01% 90.93% 777ms 0.65% PetscMallocA 7ms 0.0059% 90.93% 765ms 0.64% PetscMallocAlign (partial-inline) 1ms 0.00084% 90.93% 762ms 0.64% VecNorm 0 0% 90.93% 756ms 0.63% VecNorm_Seq 3ms 0.0025% 90.94% 744ms 0.62% BidomainProblem::WriteOneStep 721ms 0.61% 91.54% 721ms 0.61% log_inline (inline) 1ms 0.00084% 91.54% 719ms 0.6% AbstractBidomainSolver::FinaliseLinearSystem 181ms 0.15% 91.70% 716ms 0.6% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.70% 649ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.70% 599ms 0.5% boost::numeric::ublas::matrix_slice::operator= (inline)