File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12183ms, 84.96% of 14340ms total Dropped 785 nodes (cum <= 71.70ms) flat flat% sum% cum cum% 0 0% 0% 14332ms 99.94% __libc_start_call_main 0 0% 0% 14332ms 99.94% __libc_start_main_impl 0 0% 0% 14332ms 99.94% _start 0 0% 0% 14329ms 99.92% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14329ms 99.92% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14329ms 99.92% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14329ms 99.92% main 0 0% 0% 14292ms 99.67% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14292ms 99.67% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14292ms 99.67% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 0 0% 0% 14271ms 99.52% AbstractCardiacProblem::Solve 3ms 0.021% 0.021% 11305ms 78.84% AbstractDynamicLinearPdeSolver::Solve 59ms 0.41% 0.43% 8734ms 60.91% AbstractCardiacTissue::SolveCellSystems 124ms 0.86% 1.30% 5434ms 37.89% AbstractCardiacCell::ComputeExceptVoltage 78ms 0.54% 1.84% 4715ms 32.88% AbstractOneStepIvpOdeSolver::InternalSolve 148ms 1.03% 2.87% 4116ms 28.70% EulerIvpOdeSolver::CalculateNextYValue 939ms 6.55% 9.42% 3920ms 27.34% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1690ms 11.79% 21.21% 3608ms 25.16% __GI___exp 4ms 0.028% 21.23% 2902ms 20.24% MonodomainProblem::WriteOneStep 1ms 0.007% 21.24% 2772ms 19.33% H5Dwrite 2ms 0.014% 21.26% 2771ms 19.32% Hdf5DataWriter::PutVector 3ms 0.021% 21.28% 2739ms 19.10% H5D__write 67ms 0.47% 21.74% 2559ms 17.85% AbstractCardiacTissue::UpdateCaches (inline) 812ms 5.66% 27.41% 2450ms 17.09% CellLuoRudy1991FromCellML::GetIIonic 1676ms 11.69% 39.09% 1838ms 12.82% __ieee754_exp_fma 1ms 0.007% 39.10% 1830ms 12.76% H5D__chunk_collective_write 14ms 0.098% 39.20% 1829ms 12.75% H5F_set_coll_metadata_reads 3ms 0.021% 39.22% 1812ms 12.64% LinearSystem::Solve 0 0% 39.22% 1635ms 11.40% KSPSolve 3ms 0.021% 39.24% 1635ms 11.40% KSPSolve_Private 1ms 0.007% 39.25% 1614ms 11.26% KSPSolve_CG 14ms 0.098% 39.34% 1568ms 10.93% H5FD_s3comms_uriencode 0 0% 39.34% 1107ms 7.72% H5F_block_write 1ms 0.007% 39.35% 1107ms 7.72% H5PB_write 1ms 0.007% 39.36% 1106ms 7.71% H5F__accum_write 3ms 0.021% 39.38% 1105ms 7.71% H5FD_write 49ms 0.34% 39.72% 1102ms 7.68% 2ms 0.014% 39.74% 1036ms 7.22% H5D__mpio_select_write 1ms 0.007% 39.74% 904ms 6.30% PMPI_File_write_at_all 876ms 6.11% 45.85% 878ms 6.12% __GI_pwritev64 0 0% 45.85% 855ms 5.96% PCApply 1ms 0.007% 45.86% 850ms 5.93% PCApply_BJacobi_Singleblock 3ms 0.021% 45.88% 823ms 5.74% H5D__chunk_cacheable 2ms 0.014% 45.89% 792ms 5.52% KSPSolve_PREONLY 3ms 0.021% 45.91% 787ms 5.49% MatSolve 0 0% 45.91% 787ms 5.49% PCApply_ICC 766ms 5.34% 51.26% 784ms 5.47% MatSolve_SeqSBAIJ_1_NaturalOrdering 1ms 0.007% 51.26% 750ms 5.23% std::pow (inline) 89ms 0.62% 51.88% 748ms 5.22% __pow 339ms 2.36% 54.25% 739ms 5.15% MonodomainSolver::SetupLinearSystem 281ms 1.96% 56.21% 725ms 5.06% H5S_select_iterate 5ms 0.035% 56.24% 679ms 4.74% MatMult 671ms 4.68% 60.92% 674ms 4.70% MatMult_SeqAIJ 80ms 0.56% 61.48% 652ms 4.55% __ieee754_pow_fma 0 0% 61.48% 630ms 4.39% KSP_PCApply.lto_priv.7 286ms 1.99% 63.47% 552ms 3.85% CellLuoRudy1991FromCellML::VerifyStateVariables 44ms 0.31% 63.78% 532ms 3.71% H5S_mpio_space_type 51ms 0.36% 64.14% 454ms 3.17% H5D__chunk_set_sizes 3ms 0.021% 64.16% 314ms 2.19% KSPConvergedDefault 288ms 2.01% 66.16% 288ms 2.01% log_inline (inline) 262ms 1.83% 67.99% 273ms 1.90% exp_inline (inline) 57ms 0.4% 68.39% 250ms 1.74% __GI___libc_malloc 0 0% 68.39% 227ms 1.58% KSP_PCApply 107ms 0.75% 69.14% 221ms 1.54% TimeStepper::TimeStepper 182ms 1.27% 70.40% 220ms 1.53% _int_malloc 16ms 0.11% 70.52% 212ms 1.48% ompi_datatype_create 155ms 1.08% 71.60% 187ms 1.30% AbstractOneStepIvpOdeSolver::Solve 113ms 0.79% 72.38% 184ms 1.28% top12 (inline) 182ms 1.27% 73.65% 182ms 1.27% [libchaste_heart.so] 9ms 0.063% 73.72% 177ms 1.23% ompi_datatype_destroy 5ms 0.035% 73.75% 175ms 1.22% MPI_Type_free 35ms 0.24% 74.00% 171ms 1.19% __GI___libc_free 162ms 1.13% 75.13% 162ms 1.13% ddot_ 34ms 0.24% 75.36% 160ms 1.12% ompi_datatype_release_args 7ms 0.049% 75.41% 160ms 1.12% ompi_info_register_framework_params 76ms 0.53% 75.94% 154ms 1.07% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 135ms 0.94% 76.88% 153ms 1.07% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 6ms 0.042% 76.92% 140ms 0.98% PMPI_File_set_view 4ms 0.028% 76.95% 139ms 0.97% VecNorm 1ms 0.007% 76.96% 135ms 0.94% PMPI_Type_create_resized 61ms 0.43% 77.38% 135ms 0.94% _int_free 2ms 0.014% 77.40% 134ms 0.93% VecDuplicate 7ms 0.049% 77.45% 132ms 0.92% VecDuplicate_MPI 2ms 0.014% 77.46% 129ms 0.9% ompi_datatype_duplicate 1ms 0.007% 77.47% 126ms 0.88% Hdf5DataWriter::PutUnlimitedVariable 1ms 0.007% 77.48% 126ms 0.88% VecNorm_Seq 125ms 0.87% 78.35% 125ms 0.87% __ieee754_log_fma 11ms 0.077% 78.42% 117ms 0.82% H5VM_chunk_index 117ms 0.82% 79.24% 117ms 0.82% TimeStepper::CalculateNextTime 60ms 0.42% 79.66% 116ms 0.81% std::__cxx11::basic_string::basic_string 113ms 0.79% 80.45% 113ms 0.79% __memcpy_avx_unaligned_erms 41ms 0.29% 80.73% 111ms 0.77% __libc_calloc 29ms 0.2% 80.93% 110ms 0.77% AbstractCardiacCell::SetVoltage (partial-inline) 23ms 0.16% 81.09% 109ms 0.76% H5S_set_version 5ms 0.035% 81.13% 106ms 0.74% opal_datatype_create_desc 31ms 0.22% 81.35% 103ms 0.72% ompi_datatype_set_args 3ms 0.021% 81.37% 97ms 0.68% PMPI_Type_vector 6ms 0.042% 81.41% 91ms 0.63% MPI_Type_contiguous 47ms 0.33% 81.74% 89ms 0.62% H5S_hyper_add_span_element 87ms 0.61% 82.34% 87ms 0.61% [libm.so.6] 30ms 0.21% 82.55% 86ms 0.6% H5VM_array_calc 5ms 0.035% 82.59% 84ms 0.59% MPI_Type_create_hindexed 0 0% 82.59% 84ms 0.59% VecTDot 0 0% 82.59% 84ms 0.59% VecTDot_Seq 0 0% 82.59% 84ms 0.59% VecXDot_Seq_Private.constprop.0 45ms 0.31% 82.90% 78ms 0.54% AbstractCardiacCell::GetVoltage (partial-inline) 77ms 0.54% 83.44% 77ms 0.54% std::isinf (inline) 77ms 0.54% 83.97% 77ms 0.54% std::vector::operator[] (inline) 65ms 0.45% 84.43% 76ms 0.53% AbstractParameterisedSystem::GetAnyVariable 4ms 0.028% 84.46% 76ms 0.53% VecCreate 0 0% 84.46% 76ms 0.53% VecNorm_MPI 0 0% 84.46% 76ms 0.53% VecNorm_MPI_Default.constprop.0 67ms 0.47% 84.92% 75ms 0.52% AbstractParameterisedSystem::SetAnyVariable 5ms 0.035% 84.96% 74ms 0.52% PetscMallocA