File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3555ms, 84.58% of 4203ms total Dropped 447 nodes (cum <= 21.02ms) flat flat% sum% cum cum% 0 0% 0% 4195ms 99.81% __libc_start_call_main 0 0% 0% 4195ms 99.81% __libc_start_main_impl 0 0% 0% 4195ms 99.81% _start 0 0% 0% 4192ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4192ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4192ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4192ms 99.74% main 0 0% 0% 4154ms 98.83% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4154ms 98.83% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4154ms 98.83% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4148ms 98.69% AbstractCardiacProblem::Solve 0 0% 0% 4142ms 98.55% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 1968ms 46.82% LinearSystem::Solve 0 0% 0% 1794ms 42.68% KSPSolve 8ms 0.19% 0.19% 1794ms 42.68% KSPSolve_Private 3ms 0.071% 0.26% 1645ms 39.14% KSPSolve_SYMMLQ 6ms 0.14% 0.4% 1438ms 34.21% AbstractCardiacTissue::SolveCellSystems 7ms 0.17% 0.57% 976ms 23.22% MatMult 8ms 0.19% 0.76% 956ms 22.75% MatMult_SeqAIJ (partial-inline) 934ms 22.22% 22.98% 956ms 22.75% MatMult_SeqAIJ_Inode (inline) 17ms 0.4% 23.39% 810ms 19.27% AbstractCardiacCell::ComputeExceptVoltage 3ms 0.071% 23.46% 746ms 17.75% PCApply 0 0% 23.46% 735ms 17.49% PCApply_BJacobi_Singleblock 15ms 0.36% 23.82% 709ms 16.87% AbstractOneStepIvpOdeSolver::InternalSolve 96ms 2.28% 26.10% 613ms 14.58% BidomainSolver::SetupLinearSystem 34ms 0.81% 26.91% 603ms 14.35% EulerIvpOdeSolver::CalculateNextYValue 0 0% 26.91% 586ms 13.94% KSPSolve_PREONLY (partial-inline) 175ms 4.16% 31.07% 564ms 13.42% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 31.07% 563ms 13.40% KSP_PCApply.lto_priv.18 1ms 0.024% 31.10% 553ms 13.16% MatSolve 0 0% 31.10% 553ms 13.16% PCApply_ICC 545ms 12.97% 44.06% 549ms 13.06% MatSolve_SeqSBAIJ_1_NaturalOrdering 236ms 5.62% 49.68% 521ms 12.40% __GI___exp 14ms 0.33% 50.01% 506ms 12.04% AbstractCardiacTissue::UpdateCaches (inline) 164ms 3.90% 53.91% 482ms 11.47% CellLuoRudy1991FromCellML::GetIIonic 259ms 6.16% 60.08% 274ms 6.52% __ieee754_exp_fma 2ms 0.048% 60.12% 230ms 5.47% KSPConvergedDefault 0 0% 60.12% 227ms 5.40% KSP_PCApply (partial-inline) 0 0% 60.12% 219ms 5.21% VecDuplicate 11ms 0.26% 60.39% 166ms 3.95% VecDuplicate_MPI (partial-inline) 1ms 0.024% 60.41% 155ms 3.69% std::pow (inline) 17ms 0.4% 60.81% 154ms 3.66% __pow 16ms 0.38% 61.19% 136ms 3.24% __ieee754_pow_fma 11ms 0.26% 61.46% 126ms 3.00% VecCopy 1ms 0.024% 61.48% 124ms 2.95% MatNullSpaceRemove 40ms 0.95% 62.43% 118ms 2.81% MPI_Wtime 1ms 0.024% 62.46% 116ms 2.76% AbstractBidomainSolver::FinaliseLinearSystem 27ms 0.64% 63.10% 115ms 2.74% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.024% 63.12% 97ms 2.31% VecMDot 3ms 0.071% 63.19% 96ms 2.28% VecMXDot_Private 3ms 0.071% 63.26% 90ms 2.14% VecCreate 39ms 0.93% 64.19% 88ms 2.09% CellLuoRudy1991FromCellML::VerifyStateVariables 14ms 0.33% 64.53% 86ms 2.05% PetscLogEventBeginDefault 0 0% 64.53% 85ms 2.02% PetscMemcpy (inline) 9ms 0.21% 64.74% 84ms 2.00% VecCreate_MPI_Private (partial-inline) 1ms 0.024% 64.76% 81ms 1.93% VecNorm 2ms 0.048% 64.81% 77ms 1.83% __GI___clock_gettime 20ms 0.48% 65.29% 75ms 1.78% PetscLogEventEndDefault 15ms 0.36% 65.64% 75ms 1.78% PetscMallocA 75ms 1.78% 67.43% 75ms 1.78% [[vdso]] 75ms 1.78% 69.21% 75ms 1.78% __memcpy_avx_unaligned_erms 0 0% 69.21% 71ms 1.69% VecCopy_Seq (partial-inline) 69ms 1.64% 70.85% 69ms 1.64% DistributedVector::Iterator::operator!= 66ms 1.57% 72.42% 69ms 1.64% VecMDot_Seq 2ms 0.048% 72.47% 66ms 1.57% VecNorm_Seq 0 0% 72.47% 62ms 1.48% VecNorm_MPI 0 0% 72.47% 62ms 1.48% VecNorm_MPI_Default.constprop.0 62ms 1.48% 73.95% 62ms 1.48% log_inline (inline) 5ms 0.12% 74.07% 60ms 1.43% PetscMallocAlign (partial-inline) 54ms 1.28% 75.35% 54ms 1.28% ddot_ 1ms 0.024% 75.37% 53ms 1.26% VecDuplicate_Seq 49ms 1.17% 76.54% 51ms 1.21% exp_inline (inline) 50ms 1.19% 77.73% 50ms 1.19% dasum_ 18ms 0.43% 78.16% 48ms 1.14% TimeStepper::TimeStepper 2ms 0.048% 78.21% 48ms 1.14% VecDot 46ms 1.09% 79.30% 46ms 1.09% [libchaste_heart.so] 3ms 0.071% 79.37% 42ms 1% VecStashCreate_Private 7ms 0.17% 79.54% 41ms 0.98% __GI___libc_malloc 0 0% 79.54% 40ms 0.95% VecDot_Seq 0 0% 79.54% 40ms 0.95% VecXDot_Seq_Private.constprop.0 6ms 0.14% 79.68% 38ms 0.9% PetscHeaderCreate_Private 0 0% 79.68% 38ms 0.9% PetscMemzero (inline) 37ms 0.88% 80.56% 37ms 0.88% TimeStepper::CalculateNextTime 35ms 0.83% 81.39% 35ms 0.83% DistributedVector::Stripe::operator[] (inline) 5ms 0.12% 81.51% 35ms 0.83% VecAXPY 34ms 0.81% 82.32% 34ms 0.81% __memset_avx2_unaligned_erms 2ms 0.048% 82.37% 34ms 0.81% __posix_memalign 0 0% 82.37% 33ms 0.79% CxxTest::RealWorldDescription::setUp 0 0% 82.37% 33ms 0.79% PMPI_Init_thread 0 0% 82.37% 33ms 0.79% PetscInitialize 0 0% 82.37% 33ms 0.79% PetscSetup::setUpWorld 0 0% 82.37% 33ms 0.79% PetscSetupUtils::CommonSetup 0 0% 82.37% 33ms 0.79% PetscSetupUtils::InitialisePetsc 0 0% 82.37% 33ms 0.79% ompi_mpi_init 0 0% 82.37% 30ms 0.71% VecMDot_MPI 1ms 0.024% 82.39% 30ms 0.71% VecMXDot_MPI_Default (inline) 3ms 0.071% 82.46% 29ms 0.69% VecSet 1ms 0.024% 82.49% 28ms 0.67% VecDestroy 1ms 0.024% 82.51% 27ms 0.64% 6ms 0.14% 82.66% 27ms 0.64% PetscOptionsFindPair 2ms 0.048% 82.70% 26ms 0.62% VecMAXPY 13ms 0.31% 83.01% 26ms 0.62% _int_malloc 26ms 0.62% 83.63% 26ms 0.62% std::isinf (inline) 15ms 0.36% 83.99% 25ms 0.59% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 83.99% 25ms 0.59% PetscVecTools::Finalise 3ms 0.071% 84.06% 25ms 0.59% VecAssemblyBegin 3ms 0.071% 84.13% 25ms 0.59% VecSetType 14ms 0.33% 84.46% 24ms 0.57% top12 (inline) 0 0% 84.46% 23ms 0.55% orte_init 5ms 0.12% 84.58% 22ms 0.52% AbstractCardiacCell::SetVoltage (partial-inline)