File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108210ms, 91.76% of 117927ms total Dropped 1102 nodes (cum <= 589.63ms) flat flat% sum% cum cum% 0 0% 0% 117912ms 100% __libc_start_call_main 0 0% 0% 117912ms 100% __libc_start_main_impl 0 0% 0% 117912ms 100% _start 0 0% 0% 117909ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 117909ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 117909ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 117909ms 100% main 0 0% 0% 117874ms 100% AbstractConvergenceTester::Converge 0 0% 0% 117874ms 100% CxxTest::RealTestDescription::run 0 0% 0% 117874ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 117874ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 117874ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 117874ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 8ms 0.0068% 0.0068% 116642ms 98.91% AbstractCardiacProblem::Solve 12ms 0.01% 0.017% 115861ms 98.25% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.017% 64597ms 54.78% LinearSystem::Solve 0 0% 0.017% 64138ms 54.39% KSPSolve 11ms 0.0093% 0.026% 64138ms 54.39% KSPSolve_Private 9ms 0.0076% 0.034% 63763ms 54.07% KSPSolve_SYMMLQ 212ms 0.18% 0.21% 42601ms 36.12% AbstractCardiacTissue::SolveCellSystems 3ms 0.0025% 0.22% 36526ms 30.97% PCApply 4ms 0.0034% 0.22% 36518ms 30.97% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.22% 34273ms 29.06% KSPSolve_PREONLY (partial-inline) 4ms 0.0034% 0.22% 33048ms 28.02% PCApply_ICC 4ms 0.0034% 0.23% 33044ms 28.02% MatSolve 32596ms 27.64% 27.87% 33040ms 28.02% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1395ms 1.18% 29.05% 32748ms 27.77% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 29.05% 31529ms 26.74% KSP_PCApply.lto_priv.18 6882ms 5.84% 34.89% 28244ms 23.95% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0059% 34.90% 21165ms 17.95% MatMult 237ms 0.2% 35.10% 21158ms 17.94% MatMult_SeqAIJ (partial-inline) 20661ms 17.52% 52.62% 21158ms 17.94% MatMult_SeqAIJ_Inode (inline) 1978ms 1.68% 54.29% 14614ms 12.39% CardiacNewtonSolver::Solve 395ms 0.33% 54.63% 9030ms 7.66% AbstractCardiacTissue::UpdateCaches (inline) 2084ms 1.77% 56.40% 8437ms 7.15% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4273ms 3.62% 60.02% 8403ms 7.13% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1305ms 1.11% 61.13% 7633ms 6.47% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1149ms 0.97% 62.10% 7570ms 6.42% BidomainSolver::SetupLinearSystem 1ms 0.00085% 62.10% 7145ms 6.06% KSP_PCApply (partial-inline) 7ms 0.0059% 62.11% 6510ms 5.52% KSPConvergedDefault 6063ms 5.14% 67.25% 6063ms 5.14% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3756ms 3.19% 70.43% 3802ms 3.22% __ieee754_log_fma 0 0% 70.43% 3801ms 3.22% boost::numeric::ublas::norm_inf (inline) 2576ms 2.18% 72.62% 3801ms 3.22% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.62% 3801ms 3.22% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.62% 3801ms 3.22% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 12ms 0.01% 72.63% 3443ms 2.92% MatNullSpaceRemove 29ms 0.025% 72.65% 3157ms 2.68% std::pow (inline) 390ms 0.33% 72.98% 3104ms 2.63% __pow 3096ms 2.63% 75.61% 3096ms 2.63% __memcpy_avx_unaligned_erms 0 0% 75.61% 3058ms 2.59% PetscMemcpy (inline) 1815ms 1.54% 77.15% 2929ms 2.48% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2761ms 2.34% 79.49% 2761ms 2.34% ddot_ 393ms 0.33% 79.82% 2708ms 2.30% __ieee754_pow_fma 20ms 0.017% 79.84% 2645ms 2.24% VecCopy 1ms 0.00085% 79.84% 2622ms 2.22% VecCopy_Seq (partial-inline) 14ms 0.012% 79.85% 2401ms 2.04% VecAXPY 5ms 0.0042% 79.86% 2387ms 2.02% VecAXPY_Seq 2366ms 2.01% 81.86% 2366ms 2.01% daxpy_ 3ms 0.0025% 81.87% 2244ms 1.90% VecDot 0 0% 81.87% 2241ms 1.90% VecDot_Seq 4ms 0.0034% 81.87% 2241ms 1.90% VecXDot_Seq_Private.constprop.0 1ms 0.00085% 81.87% 2062ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00085% 81.87% 1926ms 1.63% VecMDot 9ms 0.0076% 81.88% 1925ms 1.63% VecMXDot_Private 1905ms 1.62% 83.49% 1913ms 1.62% VecMDot_Seq 33ms 0.028% 83.52% 1703ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1525ms 1.29% 84.81% 1583ms 1.34% exp_inline (inline) 9ms 0.0076% 84.82% 1505ms 1.28% VecMAXPY 1493ms 1.27% 86.09% 1496ms 1.27% VecMAXPY_Seq 0 0% 86.09% 1414ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.09% 1144ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.09% 1144ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.09% 1144ms 0.97% boost_numeric_ublas_abs (inline) 1144ms 0.97% 87.06% 1144ms 0.97% std::abs (inline) 6ms 0.0051% 87.06% 1102ms 0.93% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.06% 1089ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 87.06% 1089ms 0.92% CuboidMeshConstructor::Construct 1ms 0.00085% 87.06% 1089ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 202ms 0.17% 87.24% 1088ms 0.92% boost::numeric::ublas::indexing_matrix_assign 1056ms 0.9% 88.13% 1056ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 792ms 0.67% 88.80% 1032ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 3ms 0.0025% 88.80% 978ms 0.83% Element::Element 3ms 0.0025% 88.81% 954ms 0.81% AbstractTetrahedralElement::CalculateJacobian 937ms 0.79% 89.60% 937ms 0.79% __memset_avx2_unaligned_erms 0 0% 89.60% 926ms 0.79% PetscMemzero (inline) 3ms 0.0025% 89.60% 911ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 6ms 0.0051% 89.61% 887ms 0.75% BidomainAssembler::ComputeMatrixTerm 4ms 0.0034% 89.61% 870ms 0.74% boost::numeric::ublas::c_matrix::c_matrix (inline) 2ms 0.0017% 89.61% 842ms 0.71% VecDuplicate 826ms 0.7% 90.32% 826ms 0.7% [libchaste_heart.so] 4ms 0.0034% 90.32% 803ms 0.68% VecScale 1ms 0.00085% 90.32% 799ms 0.68% VecScale_Seq 793ms 0.67% 90.99% 793ms 0.67% dscal_ 2ms 0.0017% 90.99% 788ms 0.67% AbstractBidomainSolver::FinaliseLinearSystem 194ms 0.16% 91.16% 786ms 0.67% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.00085% 91.16% 728ms 0.62% VecNorm 1ms 0.00085% 91.16% 715ms 0.61% VecNorm_Seq 2ms 0.0017% 91.16% 706ms 0.6% BidomainProblem::WriteOneStep 7ms 0.0059% 91.17% 699ms 0.59% PetscMallocA 9ms 0.0076% 91.18% 692ms 0.59% PetscMallocAlign (partial-inline) 690ms 0.59% 91.76% 690ms 0.59% log_inline (inline) 0 0% 91.76% 648ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)