File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3719ms, 87.10% of 4270ms total Dropped 495 nodes (cum <= 21.35ms) flat flat% sum% cum cum% 0 0% 0% 4262ms 99.81% __libc_start_call_main 0 0% 0% 4262ms 99.81% __libc_start_main_impl 0 0% 0% 4262ms 99.81% _start 0 0% 0% 4259ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4259ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4259ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4259ms 99.74% main 0 0% 0% 4218ms 98.78% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4218ms 98.78% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4218ms 98.78% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.023% 0.023% 4209ms 98.57% AbstractCardiacProblem::Solve 3ms 0.07% 0.094% 4191ms 98.15% AbstractDynamicLinearPdeSolver::Solve 21ms 0.49% 0.59% 1995ms 46.72% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 0.63% 1873ms 43.86% LinearSystem::Solve 2ms 0.047% 0.68% 1807ms 42.32% KSPSolve 4ms 0.094% 0.77% 1807ms 42.32% KSPSolve_Private 1ms 0.023% 0.8% 1762ms 41.26% KSPSolve_CG 42ms 0.98% 1.78% 1318ms 30.87% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 268ms 6.28% 8.06% 1173ms 27.47% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.07% 8.13% 1043ms 24.43% PCApply 1ms 0.023% 8.15% 1034ms 24.22% PCApply_BJacobi_Singleblock 0 0% 8.15% 875ms 20.49% KSPSolve_PREONLY (partial-inline) 4ms 0.094% 8.24% 823ms 19.27% MatSolve 0 0% 8.24% 823ms 19.27% PCApply_ICC 803ms 18.81% 27.05% 812ms 19.02% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 27.05% 801ms 18.76% KSP_PCApply.lto_priv.7 7ms 0.16% 27.21% 595ms 13.93% AbstractCardiacTissue::UpdateCaches (inline) 161ms 3.77% 30.98% 568ms 13.30% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 3ms 0.07% 31.05% 555ms 13.00% MatMult 12ms 0.28% 31.33% 548ms 12.83% MatMult_SeqAIJ (partial-inline) 532ms 12.46% 43.79% 548ms 12.83% MatMult_SeqAIJ_Inode (inline) 80ms 1.87% 45.67% 526ms 12.32% CardiacNewtonSolver::Solve 1ms 0.023% 45.69% 340ms 7.96% KSPConvergedDefault 0 0% 45.69% 331ms 7.75% KSP_PCApply (partial-inline) 54ms 1.26% 46.96% 306ms 7.17% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 187ms 4.38% 51.33% 303ms 7.10% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 65ms 1.52% 52.86% 272ms 6.37% BidomainSolver::SetupLinearSystem 244ms 5.71% 58.57% 244ms 5.71% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 27ms 0.63% 59.20% 221ms 5.18% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 59.20% 190ms 4.45% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 41ms 0.96% 60.16% 190ms 4.45% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 1ms 0.023% 60.19% 171ms 4.00% std::pow (inline) 21ms 0.49% 60.68% 170ms 3.98% __pow 0 0% 60.68% 148ms 3.47% MatNullSpaceRemove 144ms 3.37% 64.05% 147ms 3.44% __ieee754_log_fma 19ms 0.44% 64.50% 146ms 3.42% __ieee754_pow_fma 136ms 3.19% 67.68% 136ms 3.19% ddot_ 0 0% 67.68% 127ms 2.97% boost::numeric::ublas::norm_inf (inline) 93ms 2.18% 69.86% 127ms 2.97% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 69.86% 127ms 2.97% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 69.86% 127ms 2.97% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 48ms 1.12% 70.98% 115ms 2.69% __GI___exp 0 0% 70.98% 101ms 2.37% VecDuplicate 2ms 0.047% 71.03% 101ms 2.37% VecTDot 59ms 1.38% 72.41% 97ms 2.27% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 1ms 0.023% 72.44% 95ms 2.22% VecMDot 23ms 0.54% 72.97% 94ms 2.20% MPI_Wtime 5ms 0.12% 73.09% 94ms 2.20% VecMXDot_Private 0 0% 73.09% 89ms 2.08% VecTDot_Seq 1ms 0.023% 73.11% 89ms 2.08% VecXDot_Seq_Private.constprop.0 4ms 0.094% 73.21% 80ms 1.87% VecNorm 71ms 1.66% 74.87% 75ms 1.76% exp_inline (inline) 3ms 0.07% 74.94% 71ms 1.66% __GI___clock_gettime 68ms 1.59% 76.53% 70ms 1.64% VecMDot_Seq 68ms 1.59% 78.13% 68ms 1.59% [[vdso]] 1ms 0.023% 78.15% 64ms 1.50% VecNorm_Seq 5ms 0.12% 78.27% 62ms 1.45% PetscLogEventBeginDefault 1ms 0.023% 78.29% 55ms 1.29% VecDuplicate_MPI 1ms 0.023% 78.31% 53ms 1.24% VecMAXPY 7ms 0.16% 78.48% 52ms 1.22% PetscLogEventEndDefault 51ms 1.19% 79.67% 51ms 1.19% log_inline (inline) 1ms 0.023% 79.70% 49ms 1.15% VecDestroy 41ms 0.96% 80.66% 49ms 1.15% __ieee754_exp_fma 8ms 0.19% 80.84% 47ms 1.10% PetscMallocA 3ms 0.07% 80.91% 46ms 1.08% VecDuplicate_Seq 14ms 0.33% 81.24% 41ms 0.96% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 81.24% 41ms 0.96% AbstractBidomainSolver::FinaliseLinearSystem 6ms 0.14% 81.38% 41ms 0.96% VecCopy 1ms 0.023% 81.41% 41ms 0.96% VecCreate 1ms 0.023% 81.43% 39ms 0.91% PetscMallocAlign 39ms 0.91% 82.34% 39ms 0.91% [libchaste_heart.so] 2ms 0.047% 82.39% 38ms 0.89% VecCreate_MPI_Private 0 0% 82.39% 37ms 0.87% CxxTest::RealWorldDescription::setUp 0 0% 82.39% 37ms 0.87% PMPI_Init_thread 0 0% 82.39% 37ms 0.87% PetscInitialize 0 0% 82.39% 37ms 0.87% PetscSetup::setUpWorld 0 0% 82.39% 37ms 0.87% PetscSetupUtils::CommonSetup 0 0% 82.39% 37ms 0.87% PetscSetupUtils::InitialisePetsc 0 0% 82.39% 37ms 0.87% ompi_mpi_init 34ms 0.8% 83.19% 34ms 0.8% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 83.19% 34ms 0.8% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 83.19% 34ms 0.8% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 83.19% 34ms 0.8% boost_numeric_ublas_abs (inline) 34ms 0.8% 83.98% 34ms 0.8% std::abs (inline) 32ms 0.75% 84.73% 32ms 0.75% VecMAXPY_Seq 1ms 0.023% 84.75% 31ms 0.73% 11ms 0.26% 85.01% 28ms 0.66% AbstractCardiacCell::SetVoltage 2ms 0.047% 85.06% 27ms 0.63% VecStashCreate_Private 0 0% 85.06% 26ms 0.61% VecNorm_MPI 0 0% 85.06% 26ms 0.61% VecNorm_MPI_Default.constprop.0 26ms 0.61% 85.67% 26ms 0.61% [libm.so.6] 8ms 0.19% 85.85% 26ms 0.61% __GI___libc_malloc 26ms 0.61% 86.46% 26ms 0.61% __memcpy_avx_unaligned_erms 25ms 0.59% 87.05% 25ms 0.59% DistributedVector::Iterator::operator!= 0 0% 87.05% 25ms 0.59% PetscMemcpy (inline) 2ms 0.047% 87.10% 24ms 0.56% __posix_memalign 0 0% 87.10% 24ms 0.56% orte_init 0 0% 87.10% 23ms 0.54% AbstractFeVolumeIntegralAssembler::DoAssemble