File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3717ms, 87.48% of 4249ms total Dropped 512 nodes (cum <= 21.25ms) flat flat% sum% cum cum% 0 0% 0% 4240ms 99.79% __libc_start_call_main 0 0% 0% 4240ms 99.79% __libc_start_main_impl 0 0% 0% 4240ms 99.79% _start 0 0% 0% 4237ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4237ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4237ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4237ms 99.72% main 0 0% 0% 4195ms 98.73% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4195ms 98.73% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4195ms 98.73% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4187ms 98.54% AbstractCardiacProblem::Solve 0 0% 0% 4171ms 98.16% AbstractDynamicLinearPdeSolver::Solve 25ms 0.59% 0.59% 2252ms 53.00% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 0.64% 1564ms 36.81% LinearSystem::Solve 1ms 0.024% 0.66% 1503ms 35.37% KSPSolve 4ms 0.094% 0.75% 1502ms 35.35% KSPSolve_Private 1ms 0.024% 0.78% 1454ms 34.22% KSPSolve_SYMMLQ 33ms 0.78% 1.55% 1258ms 29.61% AbstractCardiacCell::ComputeExceptVoltage 40ms 0.94% 2.49% 1071ms 25.21% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.047% 2.54% 892ms 20.99% PCApply 0 0% 2.54% 884ms 20.80% PCApply_BJacobi_Singleblock 68ms 1.60% 4.14% 861ms 20.26% EulerIvpOdeSolver::CalculateNextYValue 38ms 0.89% 5.04% 800ms 18.83% AbstractCardiacTissue::UpdateCaches (inline) 217ms 5.11% 10.14% 787ms 18.52% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1ms 0.024% 10.17% 738ms 17.37% KSPSolve_PREONLY (partial-inline) 345ms 8.12% 18.29% 717ms 16.87% __GI___exp 220ms 5.18% 23.46% 714ms 16.80% CellLuoRudy1991FromCellML::GetIIonic 2ms 0.047% 23.51% 685ms 16.12% PCApply_ICC 6ms 0.14% 23.65% 683ms 16.07% MatSolve 665ms 15.65% 39.30% 672ms 15.82% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 39.30% 671ms 15.79% KSP_PCApply.lto_priv.18 6ms 0.14% 39.44% 447ms 10.52% MatMult 13ms 0.31% 39.75% 432ms 10.17% MatMult_SeqAIJ (partial-inline) 417ms 9.81% 49.56% 432ms 10.17% MatMult_SeqAIJ_Inode (inline) 295ms 6.94% 56.51% 353ms 8.31% __ieee754_exp_fma 1ms 0.024% 56.53% 319ms 7.51% KSPConvergedDefault 1ms 0.024% 56.55% 315ms 7.41% KSP_PCApply (partial-inline) 57ms 1.34% 57.90% 311ms 7.32% BidomainSolver::SetupLinearSystem 1ms 0.024% 57.92% 267ms 6.28% std::pow (inline) 25ms 0.59% 58.51% 266ms 6.26% __pow 26ms 0.61% 59.12% 241ms 5.67% __ieee754_pow_fma 2ms 0.047% 59.17% 149ms 3.51% MatNullSpaceRemove 122ms 2.87% 62.04% 122ms 2.87% log_inline (inline) 53ms 1.25% 63.29% 105ms 2.47% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 63.31% 99ms 2.33% VecMDot 7ms 0.16% 63.47% 98ms 2.31% VecMXDot_Private 1ms 0.024% 63.50% 97ms 2.28% VecDuplicate 21ms 0.49% 63.99% 92ms 2.17% MPI_Wtime 54ms 1.27% 65.26% 85ms 2.00% TimeStepper::TimeStepper 82ms 1.93% 67.19% 84ms 1.98% exp_inline (inline) 79ms 1.86% 69.05% 79ms 1.86% ddot_ 2ms 0.047% 69.10% 71ms 1.67% __GI___clock_gettime 69ms 1.62% 70.72% 69ms 1.62% [[vdso]] 9ms 0.21% 70.93% 65ms 1.53% PetscLogEventBeginDefault 65ms 1.53% 72.46% 65ms 1.53% VecMDot_Seq 18ms 0.42% 72.89% 62ms 1.46% PetscLogEventEndDefault 3ms 0.071% 72.96% 61ms 1.44% VecNorm 1ms 0.024% 72.98% 59ms 1.39% VecDot 55ms 1.29% 74.28% 55ms 1.29% [libchaste_heart.so] 1ms 0.024% 74.30% 52ms 1.22% KSP_RemoveNullSpace (inline) 1ms 0.024% 74.32% 51ms 1.20% VecDuplicate_MPI 1ms 0.024% 74.35% 51ms 1.20% VecNorm_Seq 1ms 0.024% 74.37% 50ms 1.18% VecDestroy 0 0% 74.37% 50ms 1.18% VecDot_Seq 0 0% 74.37% 50ms 1.18% VecXDot_Seq_Private.constprop.0 2ms 0.047% 74.42% 48ms 1.13% VecMAXPY 15ms 0.35% 74.77% 46ms 1.08% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 74.79% 45ms 1.06% VecDuplicate_Seq 31ms 0.73% 75.52% 45ms 1.06% top12 (inline) 0 0% 75.52% 44ms 1.04% VecAXPY 19ms 0.45% 75.97% 41ms 0.96% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 6ms 0.14% 76.11% 41ms 0.96% VecCopy 3ms 0.071% 76.18% 41ms 0.96% VecCreate 0 0% 76.18% 40ms 0.94% AbstractBidomainSolver::FinaliseLinearSystem 4ms 0.094% 76.28% 40ms 0.94% PetscMallocA 40ms 0.94% 77.22% 40ms 0.94% asuint64 (inline) 34ms 0.8% 78.02% 39ms 0.92% AbstractOneStepIvpOdeSolver::Solve 11ms 0.26% 78.28% 38ms 0.89% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.28% 38ms 0.89% CxxTest::RealWorldDescription::setUp 0 0% 78.28% 38ms 0.89% PetscInitialize 0 0% 78.28% 38ms 0.89% PetscSetup::setUpWorld 0 0% 78.28% 38ms 0.89% PetscSetupUtils::CommonSetup 0 0% 78.28% 38ms 0.89% PetscSetupUtils::InitialisePetsc 0 0% 78.28% 37ms 0.87% PMPI_Init_thread 0 0% 78.28% 37ms 0.87% PetscTimeAdd (inline) 0 0% 78.28% 37ms 0.87% VecNorm_MPI 0 0% 78.28% 37ms 0.87% VecNorm_MPI_Default.constprop.0 0 0% 78.28% 37ms 0.87% ompi_mpi_init 29ms 0.68% 78.96% 36ms 0.85% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 2ms 0.047% 79.01% 36ms 0.85% PetscMallocAlign (partial-inline) 34ms 0.8% 79.81% 36ms 0.85% __ieee754_log_fma 35ms 0.82% 80.63% 35ms 0.82% TimeStepper::CalculateNextTime 25ms 0.59% 81.22% 33ms 0.78% AbstractParameterisedSystem::GetAnyVariable 32ms 0.75% 81.97% 33ms 0.78% VecMAXPY_Seq 3ms 0.071% 82.04% 32ms 0.75% 11ms 0.26% 82.30% 31ms 0.73% AbstractCardiacCell::GetVoltage (partial-inline) 21ms 0.49% 82.80% 31ms 0.73% TimeStepper::AdvanceOneTimeStep 30ms 0.71% 83.50% 30ms 0.71% __memcpy_avx_unaligned_erms 29ms 0.68% 84.18% 29ms 0.68% DistributedVector::Iterator::operator!= 0 0% 84.18% 28ms 0.66% VecAXPY_Seq 21ms 0.49% 84.68% 27ms 0.64% AbstractParameterisedSystem::SetAnyVariable 27ms 0.64% 85.31% 27ms 0.64% RegularStimulus::GetStimulus 27ms 0.64% 85.95% 27ms 0.64% daxpy_ 26ms 0.61% 86.56% 26ms 0.61% DistributedVector::Stripe::operator[] (inline) 8ms 0.19% 86.75% 26ms 0.61% __GI___libc_malloc 2ms 0.047% 86.80% 25ms 0.59% VecCreate_MPI_Private 0 0% 86.80% 24ms 0.56% orte_init 0 0% 86.80% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 4ms 0.094% 86.89% 22ms 0.52% PetscFreeAlign 0 0% 86.89% 22ms 0.52% PetscMemcpy (inline) 0 0% 86.89% 22ms 0.52% PetscMemzero (inline) 2ms 0.047% 86.94% 22ms 0.52% VecSet 22ms 0.52% 87.46% 22ms 0.52% __memset_avx2_unaligned_erms 1ms 0.024% 87.48% 22ms 0.52% __posix_memalign