File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3626ms, 86.89% of 4173ms total Dropped 473 nodes (cum <= 20.86ms) flat flat% sum% cum cum% 0 0% 0% 4165ms 99.81% __libc_start_call_main 0 0% 0% 4165ms 99.81% __libc_start_main_impl 0 0% 0% 4165ms 99.81% _start 0 0% 0% 4162ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4162ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4162ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4162ms 99.74% main 0 0% 0% 4125ms 98.85% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4125ms 98.85% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4125ms 98.85% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4117ms 98.66% AbstractCardiacProblem::Solve 1ms 0.024% 0.024% 4105ms 98.37% AbstractDynamicLinearPdeSolver::Solve 19ms 0.46% 0.48% 2342ms 56.12% AbstractCardiacTissue::SolveCellSystems 0 0% 0.48% 1424ms 34.12% LinearSystem::Solve 0 0% 0.48% 1390ms 33.31% KSPSolve 3ms 0.072% 0.55% 1390ms 33.31% KSPSolve_Private 3ms 0.072% 0.62% 1341ms 32.14% KSPSolve_SYMMLQ 34ms 0.81% 1.44% 1295ms 31.03% AbstractCardiacCell::ComputeExceptVoltage 19ms 0.46% 1.89% 1085ms 26.00% AbstractOneStepIvpOdeSolver::InternalSolve 38ms 0.91% 2.80% 907ms 21.73% EulerIvpOdeSolver::CalculateNextYValue 240ms 5.75% 8.55% 856ms 20.51% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1ms 0.024% 8.58% 811ms 19.43% PCApply 0 0% 8.58% 805ms 19.29% PCApply_BJacobi_Singleblock 30ms 0.72% 9.30% 796ms 19.08% AbstractCardiacTissue::UpdateCaches (inline) 324ms 7.76% 17.06% 790ms 18.93% __GI___exp 235ms 5.63% 22.69% 746ms 17.88% CellLuoRudy1991FromCellML::GetIIonic 0 0% 22.69% 651ms 15.60% KSPSolve_PREONLY (partial-inline) 2ms 0.048% 22.74% 612ms 14.67% PCApply_ICC 4ms 0.096% 22.84% 610ms 14.62% MatSolve 0 0% 22.84% 599ms 14.35% KSP_PCApply.lto_priv.18 591ms 14.16% 37.00% 599ms 14.35% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 411ms 9.85% 46.85% 440ms 10.54% __ieee754_exp_fma 3ms 0.072% 46.92% 435ms 10.42% MatMult 3ms 0.072% 46.99% 424ms 10.16% MatMult_SeqAIJ 416ms 9.97% 56.96% 424ms 10.16% MatMult_SeqAIJ_Inode (inline) 1ms 0.024% 56.99% 302ms 7.24% KSPConvergedDefault 61ms 1.46% 58.45% 291ms 6.97% BidomainSolver::SetupLinearSystem 0 0% 58.45% 282ms 6.76% KSP_PCApply (partial-inline) 26ms 0.62% 59.07% 277ms 6.64% __pow 0 0% 59.07% 277ms 6.64% std::pow (inline) 19ms 0.46% 59.53% 251ms 6.01% __ieee754_pow_fma 88ms 2.11% 61.63% 196ms 4.70% CellLuoRudy1991FromCellML::VerifyStateVariables 140ms 3.35% 64.99% 140ms 3.35% log_inline (inline) 0 0% 64.99% 118ms 2.83% MatNullSpaceRemove 1ms 0.024% 65.01% 107ms 2.56% VecDuplicate 81ms 1.94% 66.95% 84ms 2.01% exp_inline (inline) 17ms 0.41% 67.36% 83ms 1.99% MPI_Wtime 0 0% 67.36% 72ms 1.73% VecMDot 4ms 0.096% 67.46% 72ms 1.73% VecMXDot_Private 66ms 1.58% 69.04% 66ms 1.58% [[vdso]] 0 0% 69.04% 66ms 1.58% __GI___clock_gettime 38ms 0.91% 69.95% 64ms 1.53% TimeStepper::TimeStepper 6ms 0.14% 70.09% 61ms 1.46% PetscLogEventBeginDefault 12ms 0.29% 70.38% 61ms 1.46% PetscLogEventEndDefault 8ms 0.19% 70.57% 57ms 1.37% VecCopy 2ms 0.048% 70.62% 57ms 1.37% VecDuplicate_MPI 56ms 1.34% 71.96% 56ms 1.34% std::isinf (inline) 54ms 1.29% 73.26% 54ms 1.29% VecMDot_Seq 28ms 0.67% 73.93% 53ms 1.27% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 6ms 0.14% 74.07% 53ms 1.27% VecCreate 2ms 0.048% 74.12% 53ms 1.27% VecDestroy 52ms 1.25% 75.37% 52ms 1.25% ddot_ 4ms 0.096% 75.46% 49ms 1.17% VecDot 0 0% 75.46% 49ms 1.17% VecDuplicate_Seq 2ms 0.048% 75.51% 46ms 1.10% VecMAXPY 33ms 0.79% 76.30% 45ms 1.08% AbstractOneStepIvpOdeSolver::Solve 45ms 1.08% 77.38% 45ms 1.08% __ieee754_log_fma 42ms 1.01% 78.38% 42ms 1.01% __memcpy_avx_unaligned_erms 12ms 0.29% 78.67% 40ms 0.96% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.67% 40ms 0.96% AbstractBidomainSolver::FinaliseLinearSystem 13ms 0.31% 78.98% 40ms 0.96% AbstractCardiacCell::SetVoltage (partial-inline) 32ms 0.77% 79.75% 40ms 0.96% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 4ms 0.096% 79.85% 40ms 0.96% PetscMallocA 0 0% 79.85% 40ms 0.96% PetscTimeSubtract (inline) 0 0% 79.85% 40ms 0.96% VecDot_Seq 0 0% 79.85% 40ms 0.96% VecXDot_Seq_Private.constprop.0 4ms 0.096% 79.94% 39ms 0.93% VecAXPY 38ms 0.91% 80.85% 38ms 0.91% TimeStepper::CalculateNextTime 17ms 0.41% 81.26% 38ms 0.91% top12 (inline) 0 0% 81.26% 37ms 0.89% PetscMemcpy (inline) 1ms 0.024% 81.28% 36ms 0.86% PetscMallocAlign 19ms 0.46% 81.74% 35ms 0.84% TimeStepper::AdvanceOneTimeStep 0 0% 81.74% 33ms 0.79% CxxTest::RealWorldDescription::setUp 0 0% 81.74% 33ms 0.79% PMPI_Init_thread 0 0% 81.74% 33ms 0.79% PetscInitialize 0 0% 81.74% 33ms 0.79% PetscSetup::setUpWorld 0 0% 81.74% 33ms 0.79% PetscSetupUtils::CommonSetup 0 0% 81.74% 33ms 0.79% PetscSetupUtils::InitialisePetsc 0 0% 81.74% 33ms 0.79% ompi_mpi_init 16ms 0.38% 82.12% 33ms 0.79% std::__cxx11::basic_string::basic_string 3ms 0.072% 82.20% 31ms 0.74% VecCreate_MPI_Private 1ms 0.024% 82.22% 30ms 0.72% VecCopy_Seq (partial-inline) 1ms 0.024% 82.24% 30ms 0.72% VecNorm 19ms 0.46% 82.70% 28ms 0.67% AbstractParameterisedSystem::GetAnyVariable 3ms 0.072% 82.77% 28ms 0.67% PetscHeaderCreate_Private 27ms 0.65% 83.42% 28ms 0.67% VecMAXPY_Seq 23ms 0.55% 83.97% 27ms 0.65% AbstractParameterisedSystem::SetAnyVariable 4ms 0.096% 84.06% 27ms 0.65% PetscOptionsFindPair 13ms 0.31% 84.38% 26ms 0.62% AbstractCardiacCell::GetVoltage (partial-inline) 26ms 0.62% 85.00% 26ms 0.62% [libm.so.6] 0 0% 85.00% 25ms 0.6% VecAXPY_Seq 2ms 0.048% 85.05% 24ms 0.58% 1ms 0.024% 85.07% 24ms 0.58% VecDestroy_MPI 24ms 0.58% 85.65% 24ms 0.58% [libchaste_heart.so] 24ms 0.58% 86.22% 24ms 0.58% daxpy_ 23ms 0.55% 86.77% 23ms 0.55% asuint64 (inline) 0 0% 86.77% 22ms 0.53% orte_init 0 0% 86.77% 21ms 0.5% KSP_RemoveNullSpace (inline) 5ms 0.12% 86.89% 21ms 0.5% PMPI_Comm_get_attr