File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3702ms, 87.21% of 4245ms total Dropped 461 nodes (cum <= 21.23ms) flat flat% sum% cum cum% 0 0% 0% 4237ms 99.81% __libc_start_call_main 0 0% 0% 4237ms 99.81% __libc_start_main_impl 0 0% 0% 4237ms 99.81% _start 0 0% 0% 4234ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4234ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4234ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4234ms 99.74% main 0 0% 0% 4196ms 98.85% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4196ms 98.85% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4196ms 98.85% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4191ms 98.73% AbstractCardiacProblem::Solve 1ms 0.024% 0.047% 4174ms 98.33% AbstractDynamicLinearPdeSolver::Solve 8ms 0.19% 0.24% 2432ms 57.29% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.26% 1407ms 33.14% LinearSystem::Solve 40ms 0.94% 1.20% 1374ms 32.37% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.20% 1352ms 31.85% KSPSolve 2ms 0.047% 1.25% 1352ms 31.85% KSPSolve_Private 3ms 0.071% 1.32% 1307ms 30.79% KSPSolve_SYMMLQ 24ms 0.57% 1.88% 1159ms 27.30% AbstractOneStepIvpOdeSolver::InternalSolve 65ms 1.53% 3.42% 994ms 23.42% EulerIvpOdeSolver::CalculateNextYValue 245ms 5.77% 9.19% 920ms 21.67% CellLuoRudy1991FromCellML::EvaluateYDerivatives 400ms 9.42% 18.61% 854ms 20.12% __GI___exp 29ms 0.68% 19.29% 815ms 19.20% AbstractCardiacTissue::UpdateCaches (inline) 2ms 0.047% 19.34% 812ms 19.13% PCApply 1ms 0.024% 19.36% 804ms 18.94% PCApply_BJacobi_Singleblock 258ms 6.08% 25.44% 757ms 17.83% CellLuoRudy1991FromCellML::GetIIonic 0 0% 25.44% 674ms 15.88% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 25.47% 627ms 14.77% MatSolve 0 0% 25.47% 627ms 14.77% PCApply_ICC 1ms 0.024% 25.49% 620ms 14.61% KSP_PCApply.lto_priv.18 613ms 14.44% 39.93% 620ms 14.61% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 400ms 9.42% 49.35% 435ms 10.25% __ieee754_exp_fma 4ms 0.094% 49.45% 422ms 9.94% MatMult 3ms 0.071% 49.52% 414ms 9.75% MatMult_SeqAIJ 404ms 9.52% 59.03% 414ms 9.75% MatMult_SeqAIJ_Inode (inline) 55ms 1.30% 60.33% 293ms 6.90% BidomainSolver::SetupLinearSystem 1ms 0.024% 60.35% 265ms 6.24% KSPConvergedDefault 0 0% 60.35% 261ms 6.15% KSP_PCApply (partial-inline) 28ms 0.66% 61.01% 251ms 5.91% __pow 0 0% 61.01% 251ms 5.91% std::pow (inline) 29ms 0.68% 61.70% 223ms 5.25% __ieee754_pow_fma 100ms 2.36% 64.05% 200ms 4.71% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 64.05% 109ms 2.57% MatNullSpaceRemove 104ms 2.45% 66.50% 104ms 2.45% log_inline (inline) 1ms 0.024% 66.53% 103ms 2.43% VecDuplicate 13ms 0.31% 66.83% 80ms 1.88% MPI_Wtime 77ms 1.81% 68.65% 77ms 1.81% exp_inline (inline) 67ms 1.58% 70.22% 67ms 1.58% [[vdso]] 0 0% 70.22% 67ms 1.58% __GI___clock_gettime 0 0% 70.22% 64ms 1.51% VecDuplicate_MPI 0 0% 70.22% 64ms 1.51% VecMDot 3ms 0.071% 70.29% 64ms 1.51% VecMXDot_Private 31ms 0.73% 71.02% 63ms 1.48% TimeStepper::TimeStepper 4ms 0.094% 71.12% 58ms 1.37% VecCopy 6ms 0.14% 71.26% 56ms 1.32% PetscLogEventBeginDefault 9ms 0.21% 71.47% 54ms 1.27% PetscLogEventEndDefault 52ms 1.22% 72.70% 52ms 1.22% std::isinf (inline) 3ms 0.071% 72.77% 49ms 1.15% VecDestroy 49ms 1.15% 73.92% 49ms 1.15% ddot_ 42ms 0.99% 74.91% 48ms 1.13% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 4ms 0.094% 75.01% 48ms 1.13% PetscMallocA 22ms 0.52% 75.52% 46ms 1.08% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 24ms 0.57% 76.09% 46ms 1.08% top12 (inline) 2ms 0.047% 76.14% 45ms 1.06% VecMAXPY 35ms 0.82% 76.96% 44ms 1.04% AbstractOneStepIvpOdeSolver::Solve 2ms 0.047% 77.01% 44ms 1.04% PetscMallocAlign (partial-inline) 4ms 0.094% 77.10% 43ms 1.01% VecCreate 41ms 0.97% 78.07% 43ms 1.01% VecMDot_Seq 41ms 0.97% 79.03% 41ms 0.97% [libchaste_heart.so] 3ms 0.071% 79.10% 38ms 0.9% VecCreate_MPI_Private 1ms 0.024% 79.13% 38ms 0.9% VecDuplicate_Seq 0 0% 79.13% 38ms 0.9% VecNorm 3ms 0.071% 79.20% 37ms 0.87% VecAXPY 17ms 0.4% 79.60% 36ms 0.85% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 79.60% 36ms 0.85% AbstractBidomainSolver::FinaliseLinearSystem 8ms 0.19% 79.79% 36ms 0.85% AbstractCardiacCell::SetVoltage (partial-inline) 36ms 0.85% 80.64% 36ms 0.85% TimeStepper::CalculateNextTime 36ms 0.85% 81.48% 36ms 0.85% __ieee754_log_fma 36ms 0.85% 82.33% 36ms 0.85% __memcpy_avx_unaligned_erms 0 0% 82.33% 34ms 0.8% CxxTest::RealWorldDescription::setUp 0 0% 82.33% 34ms 0.8% PetscInitialize 0 0% 82.33% 34ms 0.8% PetscSetup::setUpWorld 0 0% 82.33% 34ms 0.8% PetscSetupUtils::CommonSetup 0 0% 82.33% 34ms 0.8% PetscSetupUtils::InitialisePetsc 0 0% 82.33% 34ms 0.8% VecNorm_Seq 0 0% 82.33% 33ms 0.78% PMPI_Init_thread 0 0% 82.33% 33ms 0.78% PetscMemcpy (inline) 0 0% 82.33% 33ms 0.78% ompi_mpi_init 2ms 0.047% 82.38% 32ms 0.75% VecDot 11ms 0.26% 82.64% 32ms 0.75% std::__cxx11::basic_string::basic_string 22ms 0.52% 83.16% 31ms 0.73% AbstractParameterisedSystem::GetAnyVariable 2ms 0.047% 83.20% 26ms 0.61% 10ms 0.24% 83.44% 26ms 0.61% AbstractCardiacCell::GetVoltage (partial-inline) 19ms 0.45% 83.89% 26ms 0.61% AbstractParameterisedSystem::SetAnyVariable 3ms 0.071% 83.96% 26ms 0.61% PetscHeaderDestroy_Private 1ms 0.024% 83.98% 26ms 0.61% VecCopy_Seq (partial-inline) 0 0% 83.98% 26ms 0.61% VecDot_Seq 24ms 0.57% 84.55% 26ms 0.61% VecMAXPY_Seq 0 0% 84.55% 26ms 0.61% VecXDot_Seq_Private.constprop.0 5ms 0.12% 84.66% 26ms 0.61% __GI___libc_malloc 12ms 0.28% 84.95% 25ms 0.59% TimeStepper::AdvanceOneTimeStep 1ms 0.024% 84.97% 25ms 0.59% VecAXPY_Seq 3ms 0.071% 85.04% 25ms 0.59% __posix_memalign 0 0% 85.04% 25ms 0.59% orte_init 24ms 0.57% 85.61% 24ms 0.57% asuint64 (inline) 23ms 0.54% 86.15% 23ms 0.54% DistributedVector::Iterator::operator!= 0 0% 86.15% 23ms 0.54% PetscMemzero (inline) 23ms 0.54% 86.69% 23ms 0.54% __memset_avx2_unaligned_erms 0 0% 86.69% 22ms 0.52% VecNorm_MPI 0 0% 86.69% 22ms 0.52% VecNorm_MPI_Default.constprop.0 22ms 0.52% 87.21% 22ms 0.52% daxpy_