File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 117041ms, 91.33% of 128158ms total Dropped 1160 nodes (cum <= 640.79ms) flat flat% sum% cum cum% 0 0% 0% 128143ms 100% __libc_start_call_main 0 0% 0% 128143ms 100% __libc_start_main_impl 0 0% 0% 128143ms 100% _start 0 0% 0% 128140ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 128140ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 128140ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 128140ms 100% main 0 0% 0% 128099ms 100% AbstractConvergenceTester::Converge 0 0% 0% 128099ms 100% CxxTest::RealTestDescription::run 0 0% 0% 128099ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 128099ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 128099ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 128099ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0016% 0.0016% 126909ms 99.03% AbstractCardiacProblem::Solve 10ms 0.0078% 0.0094% 126184ms 98.46% AbstractDynamicLinearPdeSolver::Solve 9ms 0.007% 0.016% 69513ms 54.24% LinearSystem::Solve 5ms 0.0039% 0.02% 68974ms 53.82% KSPSolve 11ms 0.0086% 0.029% 68972ms 53.82% KSPSolve_Private 10ms 0.0078% 0.037% 68614ms 53.54% KSPSolve_SYMMLQ 404ms 0.32% 0.35% 47493ms 37.06% AbstractCardiacTissue::SolveCellSystems 3ms 0.0023% 0.35% 39995ms 31.21% PCApply 5ms 0.0039% 0.36% 39981ms 31.20% PCApply_BJacobi_Singleblock 873ms 0.68% 1.04% 37614ms 29.35% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0031% 1.04% 37567ms 29.31% KSPSolve_PREONLY (partial-inline) 2ms 0.0016% 1.04% 36408ms 28.41% PCApply_ICC 8ms 0.0062% 1.05% 36406ms 28.41% MatSolve 36051ms 28.13% 29.18% 36398ms 28.40% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1ms 0.00078% 29.18% 34366ms 26.82% KSP_PCApply.lto_priv.18 7800ms 6.09% 35.27% 33397ms 26.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.0047% 35.27% 22862ms 17.84% MatMult 263ms 0.21% 35.48% 22856ms 17.83% MatMult_SeqAIJ (partial-inline) 22290ms 17.39% 52.87% 22851ms 17.83% MatMult_SeqAIJ_Inode (inline) 2287ms 1.78% 54.65% 16981ms 13.25% CardiacNewtonSolver::Solve 5589ms 4.36% 59.02% 10055ms 7.85% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1622ms 1.27% 60.28% 9934ms 7.75% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 146ms 0.11% 60.39% 8542ms 6.67% AbstractCardiacTissue::UpdateCaches (inline) 1710ms 1.33% 61.73% 8161ms 6.37% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 8015ms 6.25% 67.98% 8015ms 6.25% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 1163ms 0.91% 68.89% 7968ms 6.22% BidomainSolver::SetupLinearSystem 2ms 0.0016% 68.89% 7619ms 5.95% KSP_PCApply (partial-inline) 9ms 0.007% 68.90% 7053ms 5.50% KSPConvergedDefault 4166ms 3.25% 72.15% 4277ms 3.34% __ieee754_log_fma 0 0% 72.15% 4150ms 3.24% boost::numeric::ublas::norm_inf (inline) 2903ms 2.27% 74.42% 4150ms 3.24% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 74.42% 4150ms 3.24% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 74.42% 4150ms 3.24% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3345ms 2.61% 77.03% 3345ms 2.61% ddot_ 6ms 0.0047% 77.03% 3342ms 2.61% MatNullSpaceRemove 2051ms 1.60% 78.63% 3152ms 2.46% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 31ms 0.024% 78.65% 3053ms 2.38% std::pow (inline) 398ms 0.31% 78.97% 3016ms 2.35% __pow 2974ms 2.32% 81.29% 2974ms 2.32% __memcpy_avx_unaligned_erms 0 0% 81.29% 2939ms 2.29% PetscMemcpy (inline) 4ms 0.0031% 81.29% 2785ms 2.17% VecDot 0 0% 81.29% 2781ms 2.17% VecDot_Seq 6ms 0.0047% 81.29% 2781ms 2.17% VecXDot_Seq_Private.constprop.0 19ms 0.015% 81.31% 2624ms 2.05% VecCopy 2ms 0.0016% 81.31% 2598ms 2.03% VecCopy_Seq (partial-inline) 319ms 0.25% 81.56% 2583ms 2.02% __ieee754_pow_fma 4ms 0.0031% 81.56% 2114ms 1.65% VecMDot 12ms 0.0094% 81.57% 2110ms 1.65% VecMXDot_Private 11ms 0.0086% 81.58% 2096ms 1.64% VecAXPY 2087ms 1.63% 83.21% 2093ms 1.63% VecMDot_Seq 5ms 0.0039% 83.21% 2085ms 1.63% VecAXPY_Seq 2070ms 1.62% 84.83% 2070ms 1.62% daxpy_ 2ms 0.0016% 84.83% 2015ms 1.57% AbstractFeVolumeIntegralAssembler::DoAssemble 18ms 0.014% 84.84% 1661ms 1.30% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1515ms 1.18% 86.03% 1580ms 1.23% exp_inline (inline) 0 0% 86.03% 1397ms 1.09% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.03% 1240ms 0.97% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.03% 1240ms 0.97% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.03% 1240ms 0.97% boost_numeric_ublas_abs (inline) 1240ms 0.97% 86.99% 1240ms 0.97% std::abs (inline) 11ms 0.0086% 87.00% 1222ms 0.95% VecMAXPY 1209ms 0.94% 87.94% 1211ms 0.94% VecMAXPY_Seq 770ms 0.6% 88.55% 1091ms 0.85% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0016% 88.55% 1073ms 0.84% boost::numeric::ublas::matrix_assign (inline) 238ms 0.19% 88.73% 1064ms 0.83% boost::numeric::ublas::indexing_matrix_assign 7ms 0.0055% 88.74% 1030ms 0.8% KSP_RemoveNullSpace (inline) 0 0% 88.74% 1022ms 0.8% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.74% 1022ms 0.8% CuboidMeshConstructor::Construct 1ms 0.00078% 88.74% 1022ms 0.8% DistributedTetrahedralMesh::ConstructCuboid 2ms 0.0016% 88.74% 903ms 0.7% Element::Element 5ms 0.0039% 88.74% 882ms 0.69% AbstractTetrahedralElement::CalculateJacobian 878ms 0.69% 89.43% 878ms 0.69% [libchaste_heart.so] 0 0% 89.43% 873ms 0.68% AbstractBidomainSolver::FinaliseLinearSystem 212ms 0.17% 89.59% 871ms 0.68% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.0016% 89.60% 869ms 0.68% VecNorm 1ms 0.00078% 89.60% 864ms 0.67% VecNorm_Seq 6ms 0.0047% 89.60% 855ms 0.67% BidomainAssembler::ComputeMatrixTerm 1ms 0.00078% 89.60% 845ms 0.66% AbstractTetrahedralElement::AbstractTetrahedralElement 6ms 0.0047% 89.61% 821ms 0.64% boost::numeric::ublas::c_matrix::c_matrix (inline) 4ms 0.0031% 89.61% 799ms 0.62% VecScale 5ms 0.0039% 89.61% 795ms 0.62% VecScale_Seq 786ms 0.61% 90.23% 786ms 0.61% dscal_ 763ms 0.6% 90.82% 763ms 0.6% __memset_avx2_unaligned_erms 0 0% 90.82% 750ms 0.59% PetscMemzero (inline) 2ms 0.0016% 90.82% 693ms 0.54% VecDuplicate 0 0% 90.82% 662ms 0.52% BidomainProblem::WriteOneStep 642ms 0.5% 91.33% 642ms 0.5% log_inline (inline)