File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3655ms, 86.65% of 4218ms total Dropped 445 nodes (cum <= 21.09ms) flat flat% sum% cum cum% 0 0% 0% 4211ms 99.83% __libc_start_call_main 0 0% 0% 4211ms 99.83% __libc_start_main_impl 0 0% 0% 4211ms 99.83% _start 0 0% 0% 4208ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4208ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4208ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4208ms 99.76% main 0 0% 0% 4171ms 98.89% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4171ms 98.89% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4171ms 98.89% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4165ms 98.74% AbstractCardiacProblem::Solve 0 0% 0% 4147ms 98.32% AbstractDynamicLinearPdeSolver::Solve 11ms 0.26% 0.26% 2470ms 58.56% AbstractCardiacTissue::SolveCellSystems 0 0% 0.26% 1369ms 32.46% LinearSystem::Solve 40ms 0.95% 1.21% 1326ms 31.44% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.21% 1320ms 31.29% KSPSolve 9ms 0.21% 1.42% 1320ms 31.29% KSPSolve_Private 1ms 0.024% 1.45% 1288ms 30.54% KSPSolve_SYMMLQ 31ms 0.73% 2.18% 1121ms 26.58% AbstractOneStepIvpOdeSolver::InternalSolve 55ms 1.30% 3.49% 932ms 22.10% EulerIvpOdeSolver::CalculateNextYValue 33ms 0.78% 4.27% 894ms 21.19% AbstractCardiacTissue::UpdateCaches (inline) 239ms 5.67% 9.93% 866ms 20.53% CellLuoRudy1991FromCellML::EvaluateYDerivatives 3ms 0.071% 10.00% 843ms 19.99% PCApply 1ms 0.024% 10.03% 829ms 19.65% PCApply_BJacobi_Singleblock 298ms 7.06% 17.09% 827ms 19.61% CellLuoRudy1991FromCellML::GetIIonic 365ms 8.65% 25.75% 819ms 19.42% __GI___exp 0 0% 25.75% 706ms 16.74% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 25.77% 674ms 15.98% PCApply_ICC 2ms 0.047% 25.82% 673ms 15.96% MatSolve 661ms 15.67% 41.49% 665ms 15.77% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 41.49% 625ms 14.82% KSP_PCApply.lto_priv.18 403ms 9.55% 51.04% 430ms 10.19% __ieee754_exp_fma 7ms 0.17% 51.21% 380ms 9.01% MatMult 4ms 0.095% 51.30% 367ms 8.70% MatMult_SeqAIJ 359ms 8.51% 59.82% 367ms 8.70% MatMult_SeqAIJ_Inode (inline) 0 0% 59.82% 279ms 6.61% KSPConvergedDefault 1ms 0.024% 59.84% 279ms 6.61% std::pow (inline) 24ms 0.57% 60.41% 278ms 6.59% __pow 50ms 1.19% 61.59% 274ms 6.50% BidomainSolver::SetupLinearSystem 0 0% 61.59% 269ms 6.38% KSP_PCApply (partial-inline) 31ms 0.73% 62.33% 253ms 6.00% __ieee754_pow_fma 86ms 2.04% 64.37% 188ms 4.46% CellLuoRudy1991FromCellML::VerifyStateVariables 119ms 2.82% 67.19% 119ms 2.82% log_inline (inline) 0 0% 67.19% 94ms 2.23% MatNullSpaceRemove 92ms 2.18% 69.37% 92ms 2.18% exp_inline (inline) 1ms 0.024% 69.39% 87ms 2.06% VecDuplicate 17ms 0.4% 69.80% 86ms 2.04% MPI_Wtime 34ms 0.81% 70.60% 70ms 1.66% TimeStepper::TimeStepper 1ms 0.024% 70.63% 69ms 1.64% __GI___clock_gettime 68ms 1.61% 72.24% 68ms 1.61% [[vdso]] 68ms 1.61% 73.85% 68ms 1.61% ddot_ 5ms 0.12% 73.97% 65ms 1.54% PetscLogEventBeginDefault 0 0% 73.97% 63ms 1.49% VecMDot 4ms 0.095% 74.06% 63ms 1.49% VecMXDot_Private 56ms 1.33% 75.39% 56ms 1.33% std::isinf (inline) 1ms 0.024% 75.41% 55ms 1.30% VecDuplicate_MPI 0 0% 75.41% 50ms 1.19% VecDot 43ms 1.02% 76.43% 49ms 1.16% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 76.43% 49ms 1.16% VecDot_Seq 0 0% 76.43% 49ms 1.16% VecXDot_Seq_Private.constprop.0 7ms 0.17% 76.60% 47ms 1.11% PetscLogEventEndDefault 3ms 0.071% 76.67% 47ms 1.11% VecCopy 46ms 1.09% 77.76% 46ms 1.09% TimeStepper::CalculateNextTime 13ms 0.31% 78.07% 43ms 1.02% AbstractCardiacCell::SetVoltage (partial-inline) 25ms 0.59% 78.66% 41ms 0.97% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 40ms 0.95% 79.61% 41ms 0.97% VecMDot_Seq 31ms 0.73% 80.35% 40ms 0.95% AbstractOneStepIvpOdeSolver::Solve 0 0% 80.35% 39ms 0.92% VecNorm 2ms 0.047% 80.39% 35ms 0.83% VecCreate_MPI_Private 0 0% 80.39% 35ms 0.83% VecNorm_Seq 35ms 0.83% 81.22% 35ms 0.83% __ieee754_log_fma 34ms 0.81% 82.03% 34ms 0.81% [libchaste_heart.so] 21ms 0.5% 82.53% 34ms 0.81% top12 (inline) 0 0% 82.53% 33ms 0.78% CxxTest::RealWorldDescription::setUp 0 0% 82.53% 33ms 0.78% PetscInitialize 0 0% 82.53% 33ms 0.78% PetscSetup::setUpWorld 0 0% 82.53% 33ms 0.78% PetscSetupUtils::CommonSetup 0 0% 82.53% 33ms 0.78% PetscSetupUtils::InitialisePetsc 17ms 0.4% 82.93% 33ms 0.78% TimeStepper::AdvanceOneTimeStep 0 0% 82.93% 32ms 0.76% PMPI_Init_thread 0 0% 82.93% 32ms 0.76% ompi_mpi_init 1ms 0.024% 82.95% 31ms 0.73% VecCreate 2ms 0.047% 83.00% 31ms 0.73% VecDuplicate_Seq 2ms 0.047% 83.05% 31ms 0.73% VecMAXPY 1ms 0.024% 83.07% 30ms 0.71% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.024% 83.10% 30ms 0.71% VecAXPY 30ms 0.71% 83.81% 30ms 0.71% __memcpy_avx_unaligned_erms 9ms 0.21% 84.02% 29ms 0.69% AbstractBidomainSolver::CheckCompatibilityCondition 4ms 0.095% 84.12% 29ms 0.69% PetscMallocA 26ms 0.62% 84.73% 28ms 0.66% AbstractParameterisedSystem::SetAnyVariable 0 0% 84.73% 28ms 0.66% VecDestroy 4ms 0.095% 84.83% 27ms 0.64% 11ms 0.26% 85.09% 25ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 2ms 0.047% 85.14% 25ms 0.59% PetscMallocAlign 25ms 0.59% 85.73% 25ms 0.59% [libm.so.6] 13ms 0.31% 86.04% 25ms 0.59% std::__cxx11::basic_string::basic_string 22ms 0.52% 86.56% 23ms 0.55% std::vector::operator[] (inline) 0 0% 86.56% 22ms 0.52% PetscMemcpy (inline) 4ms 0.095% 86.65% 22ms 0.52% PetscOptionsFindPair 0 0% 86.65% 22ms 0.52% VecNorm_MPI 0 0% 86.65% 22ms 0.52% VecNorm_MPI_Default.constprop.0 0 0% 86.65% 22ms 0.52% orte_init