File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 111068ms, 91.78% of 121013ms total Dropped 1095 nodes (cum <= 605.07ms) flat flat% sum% cum cum% 0 0% 0% 120994ms 100% __libc_start_call_main 0 0% 0% 120994ms 100% __libc_start_main_impl 0 0% 0% 120994ms 100% _start 0 0% 0% 120992ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120992ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120992ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120992ms 100% main 0 0% 0% 120957ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120957ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120957ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120957ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120957ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120957ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 6ms 0.005% 0.005% 119706ms 98.92% AbstractCardiacProblem::Solve 6ms 0.005% 0.0099% 118876ms 98.23% AbstractDynamicLinearPdeSolver::Solve 3ms 0.0025% 0.012% 67106ms 55.45% LinearSystem::Solve 3ms 0.0025% 0.015% 66605ms 55.04% KSPSolve 13ms 0.011% 0.026% 66603ms 55.04% KSPSolve_Private 6ms 0.005% 0.031% 66165ms 54.68% KSPSolve_SYMMLQ 209ms 0.17% 0.2% 42788ms 35.36% AbstractCardiacTissue::SolveCellSystems 1ms 0.00083% 0.2% 36658ms 30.29% PCApply 8ms 0.0066% 0.21% 36648ms 30.28% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.21% 33907ms 28.02% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.21% 32767ms 27.08% PCApply_ICC 3ms 0.0025% 0.22% 32765ms 27.08% MatSolve 32223ms 26.63% 26.84% 32762ms 27.07% MatSolve_SeqSBAIJ_1_NaturalOrdering 1411ms 1.17% 28.01% 32738ms 27.05% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0025% 28.01% 31724ms 26.22% KSP_PCApply.lto_priv.18 6872ms 5.68% 33.69% 28218ms 23.32% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 12ms 0.0099% 33.70% 23033ms 19.03% MatMult 979ms 0.81% 34.51% 23021ms 19.02% MatMult_SeqAIJ (partial-inline) 21734ms 17.96% 52.47% 22257ms 18.39% MatMult_SeqAIJ_Inode (inline) 2023ms 1.67% 54.14% 14565ms 12.04% CardiacNewtonSolver::Solve 405ms 0.33% 54.48% 9166ms 7.57% AbstractCardiacTissue::UpdateCaches (inline) 2127ms 1.76% 56.23% 8548ms 7.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4355ms 3.60% 59.83% 8375ms 6.92% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1108ms 0.92% 60.75% 7976ms 6.59% BidomainSolver::SetupLinearSystem 1343ms 1.11% 61.86% 7610ms 6.29% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.86% 6958ms 5.75% KSP_PCApply (partial-inline) 7ms 0.0058% 61.86% 6354ms 5.25% KSPConvergedDefault 6035ms 4.99% 66.85% 6035ms 4.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3748ms 3.10% 69.95% 3793ms 3.13% __ieee754_log_fma 0 0% 69.95% 3737ms 3.09% boost::numeric::ublas::norm_inf (inline) 2538ms 2.10% 72.05% 3737ms 3.09% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.05% 3737ms 3.09% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.05% 3737ms 3.09% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3568ms 2.95% 74.99% 3568ms 2.95% __memcpy_avx_unaligned_erms 0 0% 74.99% 3522ms 2.91% PetscMemcpy (inline) 5ms 0.0041% 75.00% 3427ms 2.83% MatNullSpaceRemove 23ms 0.019% 75.02% 3124ms 2.58% std::pow (inline) 364ms 0.3% 75.32% 3083ms 2.55% __pow 23ms 0.019% 75.34% 3026ms 2.50% VecCopy 2ms 0.0017% 75.34% 3000ms 2.48% VecCopy_Seq (partial-inline) 1758ms 1.45% 76.79% 2951ms 2.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2914ms 2.41% 79.20% 2914ms 2.41% ddot_ 371ms 0.31% 79.51% 2710ms 2.24% __ieee754_pow_fma 16ms 0.013% 79.52% 2660ms 2.20% VecAXPY 10ms 0.0083% 79.53% 2644ms 2.18% VecAXPY_Seq 2623ms 2.17% 81.70% 2623ms 2.17% daxpy_ 6ms 0.005% 81.70% 2359ms 1.95% VecDot 2ms 0.0017% 81.70% 2353ms 1.94% VecDot_Seq 4ms 0.0033% 81.71% 2351ms 1.94% VecXDot_Seq_Private.constprop.0 3ms 0.0025% 81.71% 2085ms 1.72% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.71% 1963ms 1.62% VecMDot 10ms 0.0083% 81.72% 1963ms 1.62% VecMXDot_Private 1940ms 1.60% 83.32% 1949ms 1.61% VecMDot_Seq 38ms 0.031% 83.35% 1733ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1531ms 1.27% 84.62% 1589ms 1.31% exp_inline (inline) 8ms 0.0066% 84.62% 1459ms 1.21% VecMAXPY 1441ms 1.19% 85.81% 1451ms 1.20% VecMAXPY_Seq 0 0% 85.81% 1439ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1232ms 1.02% 86.83% 1232ms 1.02% __memset_avx2_unaligned_erms 0 0% 86.83% 1226ms 1.01% PetscMemzero (inline) 5ms 0.0041% 86.84% 1142ms 0.94% boost::numeric::ublas::matrix_assign (inline) 225ms 0.19% 87.02% 1130ms 0.93% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.02% 1111ms 0.92% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.02% 1111ms 0.92% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.02% 1111ms 0.92% boost_numeric_ublas_abs (inline) 1111ms 0.92% 87.94% 1111ms 0.92% std::abs (inline) 1107ms 0.91% 88.85% 1107ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 88.85% 1095ms 0.9% CuboidMeshConstructor::Construct 0 0% 88.85% 1093ms 0.9% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 88.86% 1093ms 0.9% DistributedTetrahedralMesh::ConstructCuboid 819ms 0.68% 89.53% 1068ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 89.53% 1019ms 0.84% VecDuplicate 3ms 0.0025% 89.54% 982ms 0.81% Element::Element 2ms 0.0017% 89.54% 981ms 0.81% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00083% 89.54% 925ms 0.76% AbstractTetrahedralElement::AbstractTetrahedralElement 18ms 0.015% 89.55% 894ms 0.74% VecScale 3ms 0.0025% 89.56% 893ms 0.74% BidomainAssembler::ComputeMatrixTerm 3ms 0.0025% 89.56% 876ms 0.72% VecScale_Seq 16ms 0.013% 89.57% 872ms 0.72% PetscMallocA 870ms 0.72% 90.29% 870ms 0.72% dscal_ 4ms 0.0033% 90.29% 861ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 8ms 0.0066% 90.30% 856ms 0.71% PetscMallocAlign (partial-inline) 853ms 0.7% 91.01% 853ms 0.7% [libchaste_heart.so] 3ms 0.0025% 91.01% 826ms 0.68% VecNorm 2ms 0.0017% 91.01% 813ms 0.67% VecNorm_Seq 0 0% 91.01% 757ms 0.63% BidomainProblem::WriteOneStep 704ms 0.58% 91.59% 704ms 0.58% log_inline (inline) 225ms 0.19% 91.78% 674ms 0.56% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.78% 674ms 0.56% AbstractBidomainSolver::FinaliseLinearSystem 5ms 0.0041% 91.78% 665ms 0.55% VecDuplicate_Seq 0 0% 91.78% 646ms 0.53% AbstractFeAssemblerInterface::Assemble (inline)