File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12518ms, 85.16% of 14700ms total Dropped 758 nodes (cum <= 73.50ms) flat flat% sum% cum cum% 0 0% 0% 14693ms 100% __libc_start_call_main 0 0% 0% 14693ms 100% __libc_start_main_impl 0 0% 0% 14693ms 100% _start 0 0% 0% 14691ms 99.94% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14691ms 99.94% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14691ms 99.94% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14691ms 99.94% main 0 0% 0% 14650ms 99.66% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14650ms 99.66% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14650ms 99.66% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 1ms 0.0068% 0.0068% 14628ms 99.51% AbstractCardiacProblem::Solve 0 0% 0.0068% 11359ms 77.27% AbstractDynamicLinearPdeSolver::Solve 39ms 0.27% 0.27% 9090ms 61.84% AbstractCardiacTissue::SolveCellSystems 129ms 0.88% 1.15% 5450ms 37.07% AbstractCardiacCell::ComputeExceptVoltage 75ms 0.51% 1.66% 4771ms 32.46% AbstractOneStepIvpOdeSolver::InternalSolve 148ms 1.01% 2.67% 4113ms 27.98% EulerIvpOdeSolver::CalculateNextYValue 895ms 6.09% 8.76% 3917ms 26.65% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1833ms 12.47% 21.22% 3655ms 24.86% __GI___exp 4ms 0.027% 21.25% 3206ms 21.81% MonodomainProblem::WriteOneStep 3ms 0.02% 21.27% 3047ms 20.73% Hdf5DataWriter::PutVector 1ms 0.0068% 21.28% 3000ms 20.41% H5Dwrite 1ms 0.0068% 21.29% 2975ms 20.24% H5D__write 105ms 0.71% 22.00% 2678ms 18.22% AbstractCardiacTissue::UpdateCaches (inline) 794ms 5.40% 27.40% 2535ms 17.24% CellLuoRudy1991FromCellML::GetIIonic 1600ms 10.88% 38.29% 1755ms 11.94% __ieee754_exp_fma 1ms 0.0068% 38.29% 1742ms 11.85% H5D__chunk_collective_write 14ms 0.095% 38.39% 1741ms 11.84% H5F_set_coll_metadata_reads 20ms 0.14% 38.52% 1567ms 10.66% H5FD_s3comms_uriencode 0 0% 38.52% 1512ms 10.29% LinearSystem::Solve 0 0% 38.52% 1372ms 9.33% KSPSolve 4ms 0.027% 38.55% 1372ms 9.33% KSPSolve_Private 3ms 0.02% 38.57% 1361ms 9.26% KSPSolve_CG 47ms 0.32% 38.89% 1183ms 8.05% 0 0% 38.89% 1183ms 8.05% H5F_block_write 5ms 0.034% 38.93% 1183ms 8.05% H5PB_write 0 0% 38.93% 1178ms 8.01% H5FD_write 0 0% 38.93% 1178ms 8.01% H5F__accum_write 5ms 0.034% 38.96% 1130ms 7.69% H5D__chunk_cacheable 5ms 0.034% 38.99% 1098ms 7.47% H5D__mpio_select_write 1ms 0.0068% 39.00% 995ms 6.77% PMPI_File_write_at_all 962ms 6.54% 45.54% 968ms 6.59% __GI_pwritev64 383ms 2.61% 48.15% 964ms 6.56% H5S_select_iterate 5ms 0.034% 48.18% 861ms 5.86% std::pow (inline) 76ms 0.52% 48.70% 855ms 5.82% __pow 380ms 2.59% 51.29% 787ms 5.35% CellLuoRudy1991FromCellML::VerifyStateVariables 104ms 0.71% 51.99% 778ms 5.29% __ieee754_pow_fma 1ms 0.0068% 52.00% 769ms 5.23% PCApply 1ms 0.0068% 52.01% 766ms 5.21% PCApply_BJacobi_Singleblock 346ms 2.35% 54.36% 738ms 5.02% MonodomainSolver::SetupLinearSystem 1ms 0.0068% 54.37% 726ms 4.94% KSPSolve_PREONLY 1ms 0.0068% 54.37% 723ms 4.92% PCApply_ICC 1ms 0.0068% 54.38% 722ms 4.91% MatSolve 707ms 4.81% 59.19% 721ms 4.90% MatSolve_SeqSBAIJ_1_NaturalOrdering 62ms 0.42% 59.61% 598ms 4.07% H5D__chunk_set_sizes 1ms 0.0068% 59.62% 540ms 3.67% KSP_PCApply.lto_priv.7 1ms 0.0068% 59.63% 516ms 3.51% MatMult 513ms 3.49% 63.12% 515ms 3.50% MatMult_SeqAIJ 58ms 0.39% 63.51% 462ms 3.14% H5S_mpio_space_type 365ms 2.48% 65.99% 365ms 2.48% log_inline (inline) 3ms 0.02% 66.01% 305ms 2.07% KSPConvergedDefault 119ms 0.81% 66.82% 290ms 1.97% TimeStepper::TimeStepper 282ms 1.92% 68.74% 284ms 1.93% exp_inline (inline) 0 0% 68.74% 232ms 1.58% KSP_PCApply 53ms 0.36% 69.10% 216ms 1.47% __GI___libc_malloc 213ms 1.45% 70.55% 213ms 1.45% std::isinf (inline) 191ms 1.30% 71.85% 191ms 1.30% [libchaste_heart.so] 150ms 1.02% 72.87% 186ms 1.27% _int_malloc 38ms 0.26% 73.13% 184ms 1.25% __GI___libc_free 12ms 0.082% 73.21% 177ms 1.20% H5VM_chunk_index 177ms 1.20% 74.41% 177ms 1.20% TimeStepper::CalculateNextTime 110ms 0.75% 75.16% 175ms 1.19% top12 (inline) 99ms 0.67% 75.84% 169ms 1.15% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 169ms 1.15% 76.99% 169ms 1.15% ddot_ 10ms 0.068% 77.05% 160ms 1.09% ompi_datatype_create 139ms 0.95% 78.00% 156ms 1.06% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 8ms 0.054% 78.05% 156ms 1.06% MPI_Type_free 8ms 0.054% 78.11% 156ms 1.06% ompi_datatype_destroy 1ms 0.0068% 78.12% 155ms 1.05% Hdf5DataWriter::PutUnlimitedVariable 48ms 0.33% 78.44% 146ms 0.99% _int_free 26ms 0.18% 78.62% 145ms 0.99% H5S_set_version 32ms 0.22% 78.84% 135ms 0.92% ompi_datatype_release_args 8ms 0.054% 78.89% 135ms 0.92% ompi_info_register_framework_params 1ms 0.0068% 78.90% 134ms 0.91% VecDuplicate 99ms 0.67% 79.57% 133ms 0.9% AbstractOneStepIvpOdeSolver::Solve 4ms 0.027% 79.60% 133ms 0.9% VecDuplicate_MPI 28ms 0.19% 79.79% 121ms 0.82% AbstractCardiacCell::SetVoltage (partial-inline) 46ms 0.31% 80.10% 119ms 0.81% H5VM_array_calc 119ms 0.81% 80.91% 119ms 0.81% __ieee754_log_fma 33ms 0.22% 81.14% 116ms 0.79% std::__cxx11::basic_string::basic_string 0 0% 81.14% 115ms 0.78% PMPI_File_set_view 2ms 0.014% 81.15% 106ms 0.72% PMPI_Type_create_resized 1ms 0.0068% 81.16% 103ms 0.7% VecNorm 42ms 0.29% 81.44% 99ms 0.67% H5S_hyper_add_span_element 2ms 0.014% 81.46% 98ms 0.67% VecNorm_Seq 0 0% 81.46% 98ms 0.67% VecTDot 64ms 0.44% 81.89% 97ms 0.66% TimeStepper::AdvanceOneTimeStep 0 0% 81.89% 97ms 0.66% VecTDot_Seq 1ms 0.0068% 81.90% 97ms 0.66% VecXDot_Seq_Private.constprop.0 0 0% 81.90% 94ms 0.64% H5Pcreate 6ms 0.041% 81.94% 92ms 0.63% VecCreate 5ms 0.034% 81.97% 91ms 0.62% H5P_create_id 88ms 0.6% 82.57% 88ms 0.6% H5VM_chunk_index_scaled 1ms 0.0068% 82.58% 88ms 0.6% ompi_datatype_duplicate 73ms 0.5% 83.07% 81ms 0.55% AbstractParameterisedSystem::SetAnyVariable 80ms 0.54% 83.62% 80ms 0.54% __memcpy_avx_unaligned_erms 79ms 0.54% 84.16% 79ms 0.54% std::vector::operator[] (inline) 78ms 0.53% 84.69% 78ms 0.53% H5VM_array_offset_pre 47ms 0.32% 85.01% 76ms 0.52% AbstractCardiacCell::GetVoltage (partial-inline) 19ms 0.13% 85.14% 75ms 0.51% ompi_datatype_set_args 3ms 0.02% 85.16% 74ms 0.5% H5SL_insert