File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3634ms, 87.10% of 4172ms total Dropped 444 nodes (cum <= 20.86ms) flat flat% sum% cum cum% 0 0% 0% 4164ms 99.81% __libc_start_call_main 0 0% 0% 4164ms 99.81% __libc_start_main_impl 0 0% 0% 4164ms 99.81% _start 0 0% 0% 4161ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4161ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4161ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4161ms 99.74% main 0 0% 0% 4125ms 98.87% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4125ms 98.87% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4125ms 98.87% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4117ms 98.68% AbstractCardiacProblem::Solve 2ms 0.048% 0.048% 4098ms 98.23% AbstractDynamicLinearPdeSolver::Solve 10ms 0.24% 0.29% 2363ms 56.64% AbstractCardiacTissue::SolveCellSystems 0 0% 0.29% 1454ms 34.85% LinearSystem::Solve 0 0% 0.29% 1401ms 33.58% KSPSolve 5ms 0.12% 0.41% 1401ms 33.58% KSPSolve_Private 4ms 0.096% 0.5% 1361ms 32.62% KSPSolve_SYMMLQ 37ms 0.89% 1.39% 1339ms 32.09% AbstractCardiacCell::ComputeExceptVoltage 28ms 0.67% 2.06% 1127ms 27.01% AbstractOneStepIvpOdeSolver::InternalSolve 53ms 1.27% 3.33% 945ms 22.65% EulerIvpOdeSolver::CalculateNextYValue 243ms 5.82% 9.16% 878ms 21.05% CellLuoRudy1991FromCellML::EvaluateYDerivatives 362ms 8.68% 17.83% 822ms 19.70% __GI___exp 3ms 0.072% 17.91% 814ms 19.51% PCApply 20ms 0.48% 18.38% 808ms 19.37% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.024% 18.41% 805ms 19.30% PCApply_BJacobi_Singleblock 257ms 6.16% 24.57% 753ms 18.05% CellLuoRudy1991FromCellML::GetIIonic 0 0% 24.57% 654ms 15.68% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 24.59% 605ms 14.50% PCApply_ICC 4ms 0.096% 24.69% 604ms 14.48% MatSolve 0 0% 24.69% 599ms 14.36% KSP_PCApply.lto_priv.18 593ms 14.21% 38.90% 598ms 14.33% MatSolve_SeqSBAIJ_1_NaturalOrdering 399ms 9.56% 48.47% 431ms 10.33% __ieee754_exp_fma 2ms 0.048% 48.51% 396ms 9.49% MatMult 4ms 0.096% 48.61% 392ms 9.40% MatMult_SeqAIJ 385ms 9.23% 57.84% 392ms 9.40% MatMult_SeqAIJ_Inode (inline) 1ms 0.024% 57.86% 290ms 6.95% KSPConvergedDefault 0 0% 57.86% 276ms 6.62% KSP_PCApply (partial-inline) 1ms 0.024% 57.89% 243ms 5.82% std::pow (inline) 29ms 0.7% 58.58% 242ms 5.80% __pow 54ms 1.29% 59.88% 236ms 5.66% BidomainSolver::SetupLinearSystem 34ms 0.81% 60.69% 213ms 5.11% __ieee754_pow_fma 79ms 1.89% 62.58% 167ms 4.00% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 62.58% 116ms 2.78% MatNullSpaceRemove 1ms 0.024% 62.61% 97ms 2.33% VecDuplicate 91ms 2.18% 64.79% 91ms 2.18% log_inline (inline) 83ms 1.99% 66.78% 83ms 1.99% exp_inline (inline) 73ms 1.75% 68.53% 73ms 1.75% ddot_ 30ms 0.72% 69.25% 68ms 1.63% TimeStepper::TimeStepper 0 0% 69.25% 67ms 1.61% VecMDot 6ms 0.14% 69.39% 67ms 1.61% VecMXDot_Private 2ms 0.048% 69.44% 64ms 1.53% VecDot 20ms 0.48% 69.92% 62ms 1.49% MPI_Wtime 9ms 0.22% 70.13% 56ms 1.34% PetscMallocA 4ms 0.096% 70.23% 55ms 1.32% VecCopy 8ms 0.19% 70.42% 53ms 1.27% PetscLogEventBeginDefault 38ms 0.91% 71.33% 52ms 1.25% AbstractOneStepIvpOdeSolver::Solve 0 0% 71.33% 52ms 1.25% VecDestroy 52ms 1.25% 72.58% 52ms 1.25% __memcpy_avx_unaligned_erms 0 0% 72.58% 51ms 1.22% VecDot_Seq 0 0% 72.58% 51ms 1.22% VecXDot_Seq_Private.constprop.0 12ms 0.29% 72.87% 50ms 1.20% PetscLogEventEndDefault 6ms 0.14% 73.01% 50ms 1.20% VecAXPY 1ms 0.024% 73.03% 49ms 1.17% VecDuplicate_Seq 4ms 0.096% 73.13% 49ms 1.17% VecMAXPY 6ms 0.14% 73.27% 48ms 1.15% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 73.30% 47ms 1.13% PetscMallocAlign (partial-inline) 1ms 0.024% 73.32% 47ms 1.13% VecDuplicate_MPI 45ms 1.08% 74.40% 47ms 1.13% VecMDot_Seq 2ms 0.048% 74.45% 47ms 1.13% VecNorm 46ms 1.10% 75.55% 47ms 1.13% __ieee754_log_fma 45ms 1.08% 76.63% 45ms 1.08% TimeStepper::CalculateNextTime 36ms 0.86% 77.49% 42ms 1.01% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 42ms 1.01% 78.50% 42ms 1.01% [[vdso]] 0 0% 78.50% 42ms 1.01% __GI___clock_gettime 22ms 0.53% 79.03% 41ms 0.98% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 2ms 0.048% 79.07% 41ms 0.98% VecCreate 0 0% 79.07% 40ms 0.96% PetscMemcpy (inline) 1ms 0.024% 79.10% 38ms 0.91% AbstractBidomainSolver::FinaliseLinearSystem 10ms 0.24% 79.34% 37ms 0.89% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.024% 79.36% 36ms 0.86% VecCopy_Seq (partial-inline) 0 0% 79.36% 35ms 0.84% VecNorm_Seq 35ms 0.84% 80.20% 35ms 0.84% [libchaste_heart.so] 13ms 0.31% 80.51% 35ms 0.84% top12 (inline) 15ms 0.36% 80.87% 33ms 0.79% std::__cxx11::basic_string::basic_string 29ms 0.7% 81.57% 32ms 0.77% AbstractParameterisedSystem::SetAnyVariable 0 0% 81.57% 32ms 0.77% CxxTest::RealWorldDescription::setUp 0 0% 81.57% 32ms 0.77% PMPI_Init_thread 0 0% 81.57% 32ms 0.77% PetscInitialize 0 0% 81.57% 32ms 0.77% PetscSetup::setUpWorld 0 0% 81.57% 32ms 0.77% PetscSetupUtils::CommonSetup 0 0% 81.57% 32ms 0.77% PetscSetupUtils::InitialisePetsc 31ms 0.74% 82.31% 32ms 0.77% VecMAXPY_Seq 0 0% 82.31% 32ms 0.77% ompi_mpi_init 31ms 0.74% 83.05% 31ms 0.74% std::isinf (inline) 0 0% 83.05% 30ms 0.72% PetscMemzero (inline) 29ms 0.7% 83.75% 29ms 0.7% [libm.so.6] 6ms 0.14% 83.89% 29ms 0.7% __GI___libc_malloc 29ms 0.7% 84.59% 29ms 0.7% __memset_avx2_unaligned_erms 2ms 0.048% 84.64% 29ms 0.7% __posix_memalign 0 0% 84.64% 28ms 0.67% VecAXPY_Seq 0 0% 84.64% 27ms 0.65% VecNorm_MPI 0 0% 84.64% 27ms 0.65% VecNorm_MPI_Default.constprop.0 27ms 0.65% 85.28% 27ms 0.65% daxpy_ 12ms 0.29% 85.57% 25ms 0.6% TimeStepper::AdvanceOneTimeStep 2ms 0.048% 85.62% 25ms 0.6% VecSetType 25ms 0.6% 86.22% 25ms 0.6% asuint64 (inline) 0 0% 86.22% 24ms 0.58% 0 0% 86.22% 24ms 0.58% VecCreate_MPI_Private 0 0% 86.22% 22ms 0.53% VecCreate_Seq 14ms 0.34% 86.55% 21ms 0.5% _int_malloc 0 0% 86.55% 21ms 0.5% orte_init 3ms 0.072% 86.63% 21ms 0.5% std::vector::_M_assign_aux (inline) 0 0% 86.63% 21ms 0.5% std::vector::assign (inline) 20ms 0.48% 87.10% 21ms 0.5% std::vector::operator[] (inline)