File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3662ms, 87.07% of 4206ms total Dropped 486 nodes (cum <= 21.03ms) flat flat% sum% cum cum% 0 0% 0% 4195ms 99.74% __libc_start_call_main 0 0% 0% 4195ms 99.74% __libc_start_main_impl 0 0% 0% 4195ms 99.74% _start 0 0% 0% 4192ms 99.67% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4192ms 99.67% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4192ms 99.67% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4192ms 99.67% main 0 0% 0% 4152ms 98.72% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4152ms 98.72% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4152ms 98.72% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.048% 0.048% 4144ms 98.53% AbstractCardiacProblem::Solve 1ms 0.024% 0.071% 4133ms 98.26% AbstractDynamicLinearPdeSolver::Solve 15ms 0.36% 0.43% 2271ms 53.99% AbstractCardiacTissue::SolveCellSystems 5ms 0.12% 0.55% 1426ms 33.90% LinearSystem::Solve 1ms 0.024% 0.57% 1384ms 32.91% KSPSolve 7ms 0.17% 0.74% 1383ms 32.88% KSPSolve_Private 2ms 0.048% 0.78% 1338ms 31.81% KSPSolve_SYMMLQ 22ms 0.52% 1.31% 1289ms 30.65% AbstractCardiacCell::ComputeExceptVoltage 42ms 1% 2.31% 1102ms 26.20% AbstractOneStepIvpOdeSolver::InternalSolve 53ms 1.26% 3.57% 881ms 20.95% EulerIvpOdeSolver::CalculateNextYValue 4ms 0.095% 3.66% 845ms 20.09% PCApply 1ms 0.024% 3.69% 832ms 19.78% PCApply_BJacobi_Singleblock 212ms 5.04% 8.73% 818ms 19.45% CellLuoRudy1991FromCellML::EvaluateYDerivatives 27ms 0.64% 9.37% 796ms 18.93% AbstractCardiacTissue::UpdateCaches (inline) 366ms 8.70% 18.07% 750ms 17.83% __GI___exp 286ms 6.80% 24.87% 735ms 17.48% CellLuoRudy1991FromCellML::GetIIonic 0 0% 24.87% 701ms 16.67% KSPSolve_PREONLY (partial-inline) 7ms 0.17% 25.04% 670ms 15.93% MatSolve 0 0% 25.04% 670ms 15.93% PCApply_ICC 653ms 15.53% 40.56% 659ms 15.67% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 40.56% 594ms 14.12% KSP_PCApply.lto_priv.18 2ms 0.048% 40.61% 481ms 11.44% MatMult 12ms 0.29% 40.89% 472ms 11.22% MatMult_SeqAIJ (partial-inline) 457ms 10.87% 51.76% 472ms 11.22% MatMult_SeqAIJ_Inode (inline) 99ms 2.35% 54.11% 386ms 9.18% BidomainSolver::SetupLinearSystem 307ms 7.30% 61.41% 363ms 8.63% __ieee754_exp_fma 0 0% 61.41% 312ms 7.42% KSPConvergedDefault 0 0% 61.41% 296ms 7.04% KSP_PCApply (partial-inline) 2ms 0.048% 61.46% 240ms 5.71% std::pow (inline) 32ms 0.76% 62.22% 237ms 5.63% __pow 18ms 0.43% 62.65% 204ms 4.85% __ieee754_pow_fma 60ms 1.43% 64.08% 120ms 2.85% CellLuoRudy1991FromCellML::VerifyStateVariables 109ms 2.59% 66.67% 109ms 2.59% log_inline (inline) 0 0% 66.67% 98ms 2.33% MatNullSpaceRemove 37ms 0.88% 67.55% 88ms 2.09% TimeStepper::TimeStepper 21ms 0.5% 68.05% 80ms 1.90% MPI_Wtime 0 0% 68.05% 73ms 1.74% VecDuplicate 67ms 1.59% 69.64% 68ms 1.62% exp_inline (inline) 0 0% 69.64% 63ms 1.50% VecMDot 6ms 0.14% 69.78% 63ms 1.50% VecMXDot_Private 10ms 0.24% 70.02% 62ms 1.47% PetscLogEventBeginDefault 4ms 0.095% 70.11% 61ms 1.45% VecCopy 15ms 0.36% 70.47% 59ms 1.40% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 70.49% 59ms 1.40% __GI___clock_gettime 58ms 1.38% 71.87% 58ms 1.38% [[vdso]] 56ms 1.33% 73.20% 56ms 1.33% ddot_ 54ms 1.28% 74.49% 54ms 1.28% [libchaste_heart.so] 50ms 1.19% 75.68% 50ms 1.19% __memcpy_avx_unaligned_erms 40ms 0.95% 76.63% 50ms 1.19% top12 (inline) 9ms 0.21% 76.84% 49ms 1.17% PetscLogEventEndDefault 49ms 1.17% 78.01% 49ms 1.17% TimeStepper::CalculateNextTime 45ms 1.07% 79.08% 46ms 1.09% VecMDot_Seq 1ms 0.024% 79.10% 43ms 1.02% VecDot 0 0% 79.10% 40ms 0.95% AbstractBidomainSolver::FinaliseLinearSystem 26ms 0.62% 79.72% 40ms 0.95% AbstractOneStepIvpOdeSolver::Solve 0 0% 79.72% 40ms 0.95% VecDuplicate_MPI 8ms 0.19% 79.91% 39ms 0.93% AbstractBidomainSolver::CheckCompatibilityCondition 3ms 0.071% 79.98% 39ms 0.93% VecNorm 15ms 0.36% 80.34% 38ms 0.9% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 33ms 0.78% 81.12% 37ms 0.88% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 33ms 0.78% 81.91% 37ms 0.88% AbstractParameterisedSystem::SetAnyVariable 7ms 0.17% 82.07% 36ms 0.86% PetscMallocA 0 0% 82.07% 36ms 0.86% VecDot_Seq 0 0% 82.07% 36ms 0.86% VecXDot_Seq_Private.constprop.0 0 0% 82.07% 35ms 0.83% CxxTest::RealWorldDescription::setUp 0 0% 82.07% 35ms 0.83% PetscInitialize 0 0% 82.07% 35ms 0.83% PetscSetup::setUpWorld 0 0% 82.07% 35ms 0.83% PetscSetupUtils::CommonSetup 0 0% 82.07% 35ms 0.83% PetscSetupUtils::InitialisePetsc 1ms 0.024% 82.10% 35ms 0.83% VecMAXPY 0 0% 82.10% 34ms 0.81% PMPI_Init_thread 0 0% 82.10% 34ms 0.81% PetscMemcpy (inline) 1ms 0.024% 82.12% 34ms 0.81% VecDestroy 0 0% 82.12% 34ms 0.81% ompi_mpi_init 1ms 0.024% 82.14% 33ms 0.78% VecDuplicate_Seq 1ms 0.024% 82.17% 32ms 0.76% VecCopy_Seq (partial-inline) 1ms 0.024% 82.19% 32ms 0.76% VecNorm_Seq 1ms 0.024% 82.22% 31ms 0.74% 1ms 0.024% 82.24% 30ms 0.71% VecCreate 25ms 0.59% 82.83% 29ms 0.69% AbstractParameterisedSystem::GetAnyVariable 0 0% 82.83% 29ms 0.69% KSP_RemoveNullSpace (inline) 2ms 0.048% 82.88% 29ms 0.69% PetscMallocAlign (partial-inline) 28ms 0.67% 83.55% 28ms 0.67% DistributedVector::Iterator::operator!= 27ms 0.64% 84.19% 28ms 0.67% __ieee754_log_fma 27ms 0.64% 84.83% 27ms 0.64% asuint64 (inline) 11ms 0.26% 85.09% 25ms 0.59% AbstractCardiacCell::GetVoltage (partial-inline) 0 0% 85.09% 24ms 0.57% PetscMemzero (inline) 2ms 0.048% 85.14% 24ms 0.57% VecAXPY 11ms 0.26% 85.40% 23ms 0.55% TimeStepper::AdvanceOneTimeStep 0 0% 85.40% 23ms 0.55% VecNorm_MPI 0 0% 85.40% 23ms 0.55% VecNorm_MPI_Default.constprop.0 3ms 0.071% 85.47% 23ms 0.55% VecSet 23ms 0.55% 86.02% 23ms 0.55% __memset_avx2_unaligned_erms 0 0% 86.02% 23ms 0.55% std::vector::_M_assign_aux (inline) 0 0% 86.02% 23ms 0.55% std::vector::assign (inline) 0 0% 86.02% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 22ms 0.52% 86.54% 22ms 0.52% TimeStepper::GetNextTimeStep 22ms 0.52% 87.07% 22ms 0.52% [libm.so.6]