File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3552ms, 87.68% of 4051ms total Dropped 490 nodes (cum <= 20.25ms) flat flat% sum% cum cum% 0 0% 0% 4044ms 99.83% __libc_start_call_main 0 0% 0% 4044ms 99.83% __libc_start_main_impl 0 0% 0% 4044ms 99.83% _start 0 0% 0% 4041ms 99.75% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4041ms 99.75% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4041ms 99.75% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4041ms 99.75% main 0 0% 0% 4000ms 98.74% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4000ms 98.74% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4000ms 98.74% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.025% 0.025% 3991ms 98.52% AbstractCardiacProblem::Solve 0 0% 0.025% 3973ms 98.07% AbstractDynamicLinearPdeSolver::Solve 1ms 0.025% 0.049% 2018ms 49.81% LinearSystem::Solve 0 0% 0.049% 1979ms 48.85% KSPSolve 2ms 0.049% 0.099% 1979ms 48.85% KSPSolve_Private 1ms 0.025% 0.12% 1938ms 47.84% KSPSolve_CG 9ms 0.22% 0.35% 1620ms 39.99% AbstractCardiacTissue::SolveCellSystems 2ms 0.049% 0.39% 1236ms 30.51% PCApply 1ms 0.025% 0.42% 1224ms 30.21% PCApply_BJacobi_Singleblock 71ms 1.75% 2.17% 1103ms 27.23% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.025% 2.20% 1023ms 25.25% KSPSolve_PREONLY (partial-inline) 1ms 0.025% 2.22% 965ms 23.82% PCApply_ICC 7ms 0.17% 2.39% 964ms 23.80% MatSolve 944ms 23.30% 25.70% 953ms 23.53% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 25.70% 952ms 23.50% KSP_PCApply.lto_priv.7 212ms 5.23% 30.93% 950ms 23.45% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.15% 31.08% 610ms 15.06% MatMult 8ms 0.2% 31.28% 598ms 14.76% MatMult_SeqAIJ (partial-inline) 585ms 14.44% 45.72% 598ms 14.76% MatMult_SeqAIJ_Inode (inline) 15ms 0.37% 46.09% 472ms 11.65% AbstractCardiacTissue::UpdateCaches (inline) 127ms 3.14% 49.22% 444ms 10.96% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 55ms 1.36% 50.58% 430ms 10.61% CardiacNewtonSolver::Solve 0 0% 50.58% 370ms 9.13% KSP_PCApply (partial-inline) 2ms 0.049% 50.63% 363ms 8.96% KSPConvergedDefault 54ms 1.33% 51.96% 291ms 7.18% BidomainSolver::SetupLinearSystem 133ms 3.28% 55.25% 253ms 6.25% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 21ms 0.52% 55.76% 219ms 5.41% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 55.76% 198ms 4.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 44ms 1.09% 56.85% 198ms 4.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 32ms 0.79% 57.64% 195ms 4.81% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 158ms 3.90% 61.54% 158ms 3.90% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 23ms 0.57% 62.11% 145ms 3.58% __pow 0 0% 62.11% 145ms 3.58% std::pow (inline) 0 0% 62.11% 144ms 3.55% MatNullSpaceRemove 60ms 1.48% 63.59% 134ms 3.31% __GI___exp 126ms 3.11% 66.70% 128ms 3.16% __ieee754_log_fma 20ms 0.49% 67.19% 121ms 2.99% __ieee754_pow_fma 115ms 2.84% 70.03% 115ms 2.84% ddot_ 0 0% 70.03% 113ms 2.79% boost::numeric::ublas::norm_inf (inline) 73ms 1.80% 71.83% 113ms 2.79% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.83% 113ms 2.79% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.83% 113ms 2.79% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 0 0% 71.83% 99ms 2.44% VecDuplicate 0 0% 71.83% 86ms 2.12% VecMDot 12ms 0.3% 72.13% 86ms 2.12% VecMXDot_Private 2ms 0.049% 72.18% 85ms 2.10% VecTDot 54ms 1.33% 73.51% 81ms 2.00% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 21ms 0.52% 74.03% 79ms 1.95% MPI_Wtime 70ms 1.73% 75.76% 74ms 1.83% __ieee754_exp_fma 0 0% 75.76% 73ms 1.80% VecTDot_Seq 0 0% 75.76% 73ms 1.80% VecXDot_Seq_Private.constprop.0 68ms 1.68% 77.44% 71ms 1.75% exp_inline (inline) 15ms 0.37% 77.81% 63ms 1.56% PetscLogEventBeginDefault 2ms 0.049% 77.86% 61ms 1.51% VecDestroy 1ms 0.025% 77.88% 61ms 1.51% VecNorm 3ms 0.074% 77.96% 58ms 1.43% VecMAXPY 1ms 0.025% 77.98% 57ms 1.41% __GI___clock_gettime 56ms 1.38% 79.36% 56ms 1.38% [[vdso]] 51ms 1.26% 80.62% 52ms 1.28% VecMDot_Seq 15ms 0.37% 80.99% 50ms 1.23% PetscLogEventEndDefault 1ms 0.025% 81.02% 50ms 1.23% VecDuplicate_Seq 1ms 0.025% 81.04% 50ms 1.23% VecNorm_Seq 1ms 0.025% 81.07% 49ms 1.21% VecDuplicate_MPI 0 0% 81.07% 40ms 0.99% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 81.07% 40ms 0.99% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 81.07% 40ms 0.99% boost_numeric_ublas_abs (inline) 40ms 0.99% 82.05% 40ms 0.99% std::abs (inline) 12ms 0.3% 82.35% 38ms 0.94% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 82.35% 38ms 0.94% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 82.35% 37ms 0.91% CxxTest::RealWorldDescription::setUp 0 0% 82.35% 37ms 0.91% PMPI_Init_thread 0 0% 82.35% 37ms 0.91% PetscInitialize 0 0% 82.35% 37ms 0.91% PetscSetup::setUpWorld 0 0% 82.35% 37ms 0.91% PetscSetupUtils::CommonSetup 0 0% 82.35% 37ms 0.91% PetscSetupUtils::InitialisePetsc 3ms 0.074% 82.42% 37ms 0.91% VecCopy 3ms 0.074% 82.50% 37ms 0.91% VecCreate 0 0% 82.50% 37ms 0.91% ompi_mpi_init 34ms 0.84% 83.34% 34ms 0.84% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 34ms 0.84% 84.18% 34ms 0.84% [libchaste_heart.so] 3ms 0.074% 84.25% 32ms 0.79% VecCreate_MPI_Private 10ms 0.25% 84.50% 31ms 0.77% PetscHeaderDestroy_Private 2ms 0.049% 84.55% 31ms 0.77% PetscMallocA 28ms 0.69% 85.24% 31ms 0.77% VecMAXPY_Seq 0 0% 85.24% 30ms 0.74% PetscMemcpy (inline) 1ms 0.025% 85.26% 29ms 0.72% PetscMallocAlign 1ms 0.025% 85.29% 28ms 0.69% 28ms 0.69% 85.98% 28ms 0.69% DistributedVector::Iterator::operator!= 27ms 0.67% 86.65% 27ms 0.67% __memcpy_avx_unaligned_erms 27ms 0.67% 87.31% 27ms 0.67% log_inline (inline) 6ms 0.15% 87.46% 25ms 0.62% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#3}::operator() (inline) 3ms 0.074% 87.53% 25ms 0.62% VecSetType 0 0% 87.53% 25ms 0.62% orte_init 0 0% 87.53% 22ms 0.54% VecAXPY 5ms 0.12% 87.66% 22ms 0.54% __GI___libc_malloc 1ms 0.025% 87.68% 21ms 0.52% __posix_memalign