File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 344ms, 90.77% of 379ms total Dropped 124 nodes (cum <= 1.90ms) flat flat% sum% cum cum% 0 0% 0% 372ms 98.15% __libc_start_call_main 0 0% 0% 372ms 98.15% __libc_start_main_impl 0 0% 0% 372ms 98.15% _start 0 0% 0% 370ms 97.63% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 370ms 97.63% CxxTest::TestRunner::runAllTests 0 0% 0% 370ms 97.63% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 370ms 97.63% main 0 0% 0% 332ms 87.60% CxxTest::RealTestDescription::run 0 0% 0% 332ms 87.60% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 332ms 87.60% CxxTest::TestRunner::runTest (inline) 0 0% 0% 332ms 87.60% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 332ms 87.60% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 329ms 86.81% AbstractCardiacProblem::Solve 0 0% 0% 328ms 86.54% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 301ms 79.42% LinearSystem::Solve 0 0% 0% 300ms 79.16% KSPSolve 0 0% 0% 300ms 79.16% KSPSolve_CG 0 0% 0% 300ms 79.16% KSPSolve_Private 0 0% 0% 162ms 42.74% KSP_PCApply.lto_priv.7 1ms 0.26% 0.26% 157ms 41.42% PCApply 0 0% 0.26% 156ms 41.16% PCApply_BJacobi_Singleblock 0 0% 0.26% 121ms 31.93% KSPSolve_PREONLY (partial-inline) 0 0% 0.26% 117ms 30.87% MatSolve 116ms 30.61% 30.87% 117ms 30.87% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 30.87% 117ms 30.87% PCApply_ICC 0 0% 30.87% 68ms 17.94% MatMult 0 0% 30.87% 68ms 17.94% MatMult_SeqAIJ 68ms 17.94% 48.81% 68ms 17.94% MatMult_SeqAIJ_Inode (inline) 50ms 13.19% 62.01% 50ms 13.19% ddot_ 0 0% 62.01% 39ms 10.29% VecTDot 0 0% 62.01% 39ms 10.29% VecTDot_Seq 0 0% 62.01% 39ms 10.29% VecXDot_Seq_Private.constprop.0 0 0% 62.01% 35ms 9.23% CxxTest::RealWorldDescription::setUp 0 0% 62.01% 35ms 9.23% PetscSetup::setUpWorld 0 0% 62.01% 35ms 9.23% PetscSetupUtils::CommonSetup 0 0% 62.01% 35ms 9.23% PetscSetupUtils::InitialisePetsc 0 0% 62.01% 34ms 8.97% PMPI_Init_thread 0 0% 62.01% 34ms 8.97% PetscInitialize 0 0% 62.01% 34ms 8.97% ompi_mpi_init 1ms 0.26% 62.27% 32ms 8.44% 0 0% 62.27% 24ms 6.33% MatNullSpaceRemove 0 0% 62.27% 23ms 6.07% orte_init 1ms 0.26% 62.53% 22ms 5.80% AbstractCardiacTissue::SolveCellSystems 0 0% 62.53% 17ms 4.49% VecMDot 17ms 4.49% 67.02% 17ms 4.49% VecMDot_Seq 0 0% 67.02% 17ms 4.49% VecMXDot_Private 0 0% 67.02% 17ms 4.49% __GI__dl_catch_exception 0 0% 67.02% 17ms 4.49% _dl_catch_error 0 0% 67.02% 17ms 4.49% _dlerror_run 0 0% 67.02% 15ms 3.96% opal_stackframe_output 0 0% 67.02% 14ms 3.69% AbstractCardiacCell::ComputeExceptVoltage 0 0% 67.02% 14ms 3.69% VecAYPX 14ms 3.69% 70.71% 14ms 3.69% VecAYPX_Seq 0 0% 70.71% 14ms 3.69% VecDuplicate 0 0% 70.71% 14ms 3.69% VecDuplicate_Seq 0 0% 70.71% 14ms 3.69% hwloc_topology_load 0 0% 70.71% 13ms 3.43% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 70.71% 13ms 3.43% ___dlopen 0 0% 70.71% 13ms 3.43% _dl_open 0 0% 70.71% 13ms 3.43% dl_open_worker 0 0% 70.71% 13ms 3.43% dlopen_doit 0 0% 70.71% 13ms 3.43% dlopen_implementation (inline) 0 0% 70.71% 13ms 3.43% hwloc_linux_get_tid_last_cpu_location 0 0% 70.71% 13ms 3.43% mca_base_framework_open 0 0% 70.71% 12ms 3.17% mca_base_framework_components_register 0 0% 70.71% 12ms 3.17% mca_base_framework_register 3ms 0.79% 71.50% 11ms 2.90% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 71.50% 11ms 2.90% EulerIvpOdeSolver::CalculateNextYValue 0 0% 71.50% 11ms 2.90% VecNorm 0 0% 71.50% 11ms 2.90% VecNorm_Seq 0 0% 71.50% 11ms 2.90% mca_base_component_find 0 0% 71.50% 11ms 2.90% mca_base_component_repository_open 0 0% 71.50% 10ms 2.64% _dl_init 0 0% 71.50% 10ms 2.64% call_init (inline) 2ms 0.53% 72.03% 9ms 2.37% PetscMallocA 0 0% 72.03% 9ms 2.37% VecSetType 5ms 1.32% 73.35% 9ms 2.37% __GI___exp 0 0% 73.35% 9ms 2.37% dl_open_worker_begin 2ms 0.53% 73.88% 7ms 1.85% PetscMallocAlign 0 0% 73.88% 7ms 1.85% VecMAXPY 6ms 1.58% 75.46% 7ms 1.85% VecMAXPY_Seq 0 0% 75.46% 7ms 1.85% _dl_map_object 0 0% 75.46% 7ms 1.85% mca_base_framework_components_open 0 0% 75.46% 6ms 1.58% AbstractCardiacTissue::UpdateCaches (inline) 3ms 0.79% 76.25% 6ms 1.58% CellLuoRudy1991FromCellML::GetIIonic 0 0% 76.25% 6ms 1.58% KSP_PCApply (partial-inline) 0 0% 76.25% 6ms 1.58% PetscMemcpy (inline) 0 0% 76.25% 6ms 1.58% VecCreate_Seq 1ms 0.26% 76.52% 6ms 1.58% __GI___libc_malloc 6ms 1.58% 78.10% 6ms 1.58% __memcpy_avx512_unaligned_erms 0 0% 78.10% 6ms 1.58% _dl_start_user 3ms 0.79% 78.89% 6ms 1.58% boost::serialization::singleton::get_instance 0 0% 78.89% 6ms 1.58% mca_topo_base_dist_graph_neighbors_count 1ms 0.26% 79.16% 5ms 1.32% BidomainSolver::SetupLinearSystem 0 0% 79.16% 5ms 1.32% VecCopy 0 0% 79.16% 5ms 1.32% VecCopy_Seq (partial-inline) 0 0% 79.16% 5ms 1.32% _dl_map_object_deps 0 0% 79.16% 5ms 1.32% opal_hwloc_base_get_topology 0 0% 79.16% 5ms 1.32% openaux 0 0% 79.16% 5ms 1.32% orte_ess_base_proc_binding 0 0% 79.16% 4ms 1.06% VecAXPY 0 0% 79.16% 4ms 1.06% VecAXPY_Seq 0 0% 79.16% 4ms 1.06% VecCreate 4ms 1.06% 80.21% 4ms 1.06% __GI___clock_nanosleep 4ms 1.06% 81.27% 4ms 1.06% __GI___libc_read 0 0% 81.27% 4ms 1.06% __GI___nanosleep 0 0% 81.27% 4ms 1.06% __dlclose 4ms 1.06% 82.32% 4ms 1.06% __ieee754_exp_fma 1ms 0.26% 82.59% 4ms 1.06% __posix_memalign 0 0% 82.59% 4ms 1.06% _dl_close 0 0% 82.59% 4ms 1.06% _dl_close_worker (inline) 0 0% 82.59% 4ms 1.06% _dl_lookup_symbol_x 1ms 0.26% 82.85% 4ms 1.06% _dl_runtime_resolve_xsavec 4ms 1.06% 83.91% 4ms 1.06% daxpy_ 4ms 1.06% 84.96% 4ms 1.06% do_lookup_x 0 0% 84.96% 4ms 1.06% usleep 0 0% 84.96% 3ms 0.79% AbstractCardiacProblem::Initialise 0 0% 84.96% 3ms 0.79% CxxTest::RealWorldDescription::tearDown 0 0% 84.96% 3ms 0.79% PetscFinalize 0 0% 84.96% 3ms 0.79% PetscSetup::tearDownWorld 0 0% 84.96% 3ms 0.79% PetscSetupUtils::CommonFinalize 0 0% 84.96% 3ms 0.79% XOpenDisplay 0 0% 84.96% 3ms 0.79% [hwloc_gl.so] 0 0% 84.96% 3ms 0.79% [libxcb.so.1.1.0] 0 0% 84.96% 3ms 0.79% _XConnectXCB 3ms 0.79% 85.75% 3ms 0.79% __GI_munmap 2ms 0.53% 86.28% 3ms 0.79% __cxa_finalize 3ms 0.79% 87.07% 3ms 0.79% __mmap64 0 0% 87.07% 3ms 0.79% _dl_call_fini 1ms 0.26% 87.34% 3ms 0.79% _dl_fixup 0 0% 87.34% 3ms 0.79% _dl_map_object_from_fd 0 0% 87.34% 3ms 0.79% _dl_map_segments (inline) 0 0% 87.34% 3ms 0.79% _dl_unmap 0 0% 87.34% 3ms 0.79% _dl_unmap_segments (inline) 3ms 0.79% 88.13% 3ms 0.79% _int_malloc 0 0% 88.13% 3ms 0.79% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 88.13% 3ms 0.79% mca_base_component_repository_release 0 0% 88.13% 3ms 0.79% mca_base_components_close 0 0% 88.13% 3ms 0.79% ompi_mpi_finalize 3ms 0.79% 88.92% 3ms 0.79% strcmp 0 0% 88.92% 3ms 0.79% xcb_connect_to_display_with_auth_info 0 0% 88.92% 2ms 0.53% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 88.92% 2ms 0.53% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 88.92% 2ms 0.53% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 88.92% 2ms 0.53% BidomainAssembler::ComputeMatrixTerm 0 0% 88.92% 2ms 0.53% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 88.92% 2ms 0.53% KSPConvergedDefault 0 0% 88.92% 2ms 0.53% KSPConvergedReasonViewFromOptions 0 0% 88.92% 2ms 0.53% MPI_Comm_set_attr 0 0% 88.92% 2ms 0.53% PetscHeaderCreate_Private 1ms 0.26% 89.18% 2ms 0.53% PetscOptionsFindPair 0 0% 89.18% 2ms 0.53% PetscOptionsGetViewer 0 0% 89.18% 2ms 0.53% VecCreate_Seq_Private 0 0% 89.18% 2ms 0.53% [hwloc_pci.so] 0 0% 89.18% 2ms 0.53% [libpciaccess.so.0.11.1] 0 0% 89.18% 2ms 0.53% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 2ms 0.53% 89.71% 2ms 0.53% __GI___close 0 0% 89.71% 2ms 0.53% __GI_exit 0 0% 89.71% 2ms 0.53% __GI_getaddrinfo 0 0% 89.71% 2ms 0.53% __run_exit_handlers 2ms 0.53% 90.24% 2ms 0.53% __strcmp_evex 0 0% 90.24% 2ms 0.53% _dl_fini 0 0% 90.24% 2ms 0.53% _dl_open_relocate_one_object (inline) 0 0% 90.24% 2ms 0.53% _dl_relocate_object 0 0% 90.24% 2ms 0.53% boost::numeric::ublas::c_matrix::c_matrix (inline) 0 0% 90.24% 2ms 0.53% boost::numeric::ublas::indexing_matrix_assign 0 0% 90.24% 2ms 0.53% boost::numeric::ublas::matrix_assign (inline) 0 0% 90.24% 2ms 0.53% elf_dynamic_do_Rela (inline) 0 0% 90.24% 2ms 0.53% elf_machine_rela (inline) 0 0% 90.24% 2ms 0.53% mca_base_framework_close 0 0% 90.24% 2ms 0.53% mca_base_select 0 0% 90.24% 2ms 0.53% ompi_attr_set_c 0 0% 90.24% 2ms 0.53% operator new 0 0% 90.24% 2ms 0.53% pci_get_strings 0 0% 90.24% 2ms 0.53% resolve_map (inline) 0 0% 90.24% 2ms 0.53% tcache_get (inline) 2ms 0.53% 90.77% 2ms 0.53% tcache_get_n (inline)