File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108494ms, 91.83% of 118141ms total Dropped 1121 nodes (cum <= 590.71ms) flat flat% sum% cum cum% 0 0% 0% 118129ms 100% __libc_start_call_main 0 0% 0% 118129ms 100% __libc_start_main_impl 0 0% 0% 118129ms 100% _start 0 0% 0% 118126ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118126ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118126ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118126ms 100% main 0 0% 0% 118091ms 100% AbstractConvergenceTester::Converge 0 0% 0% 118091ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118091ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118091ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118091ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118091ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0017% 0.0017% 116841ms 98.90% AbstractCardiacProblem::Solve 6ms 0.0051% 0.0068% 116061ms 98.24% AbstractDynamicLinearPdeSolver::Solve 2ms 0.0017% 0.0085% 64811ms 54.86% LinearSystem::Solve 3ms 0.0025% 0.011% 64403ms 54.51% KSPSolve 16ms 0.014% 0.025% 64401ms 54.51% KSPSolve_Private 12ms 0.01% 0.035% 63998ms 54.17% KSPSolve_SYMMLQ 211ms 0.18% 0.21% 42508ms 35.98% AbstractCardiacTissue::SolveCellSystems 5ms 0.0042% 0.22% 36513ms 30.91% PCApply 3ms 0.0025% 0.22% 36501ms 30.90% PCApply_BJacobi_Singleblock 1ms 0.00085% 0.22% 33988ms 28.77% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.22% 32896ms 27.84% PCApply_ICC 7ms 0.0059% 0.23% 32894ms 27.84% MatSolve 32366ms 27.40% 27.62% 32887ms 27.84% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1382ms 1.17% 28.79% 32547ms 27.55% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0025% 28.80% 31439ms 26.61% KSP_PCApply.lto_priv.18 6981ms 5.91% 34.71% 28201ms 23.87% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 9ms 0.0076% 34.71% 21597ms 18.28% MatMult 190ms 0.16% 34.87% 21588ms 18.27% MatMult_SeqAIJ (partial-inline) 21076ms 17.84% 52.71% 21586ms 18.27% MatMult_SeqAIJ_Inode (inline) 1991ms 1.69% 54.40% 14609ms 12.37% CardiacNewtonSolver::Solve 368ms 0.31% 54.71% 9117ms 7.72% AbstractCardiacTissue::UpdateCaches (inline) 1894ms 1.60% 56.31% 8558ms 7.24% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4284ms 3.63% 59.94% 8459ms 7.16% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1125ms 0.95% 60.89% 7649ms 6.47% BidomainSolver::SetupLinearSystem 1156ms 0.98% 61.87% 7283ms 6.16% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0017% 61.87% 7068ms 5.98% KSP_PCApply (partial-inline) 8ms 0.0068% 61.88% 6491ms 5.49% KSPConvergedDefault 5878ms 4.98% 66.85% 5878ms 4.98% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3851ms 3.26% 70.11% 3896ms 3.30% __ieee754_log_fma 0 0% 70.11% 3718ms 3.15% boost::numeric::ublas::norm_inf (inline) 2462ms 2.08% 72.20% 3718ms 3.15% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.20% 3718ms 3.15% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.20% 3718ms 3.15% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 8ms 0.0068% 72.21% 3377ms 2.86% MatNullSpaceRemove 33ms 0.028% 72.23% 3286ms 2.78% std::pow (inline) 371ms 0.31% 72.55% 3243ms 2.75% __pow 3209ms 2.72% 75.26% 3209ms 2.72% __memcpy_avx_unaligned_erms 0 0% 75.26% 3164ms 2.68% PetscMemcpy (inline) 399ms 0.34% 75.60% 2862ms 2.42% __ieee754_pow_fma 1739ms 1.47% 77.07% 2809ms 2.38% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2716ms 2.30% 79.37% 2716ms 2.30% ddot_ 23ms 0.019% 79.39% 2679ms 2.27% VecCopy 3ms 0.0025% 79.39% 2655ms 2.25% VecCopy_Seq (partial-inline) 17ms 0.014% 79.41% 2400ms 2.03% VecAXPY 5ms 0.0042% 79.41% 2383ms 2.02% VecAXPY_Seq 2363ms 2.00% 81.41% 2363ms 2.00% daxpy_ 3ms 0.0025% 81.42% 2203ms 1.86% VecDot 2ms 0.0017% 81.42% 2200ms 1.86% VecDot_Seq 1ms 0.00085% 81.42% 2198ms 1.86% VecXDot_Seq_Private.constprop.0 0 0% 81.42% 2063ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00085% 81.42% 1948ms 1.65% VecMDot 16ms 0.014% 81.43% 1947ms 1.65% VecMXDot_Private 1915ms 1.62% 83.05% 1928ms 1.63% VecMDot_Seq 34ms 0.029% 83.08% 1718ms 1.45% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1573ms 1.33% 84.41% 1640ms 1.39% exp_inline (inline) 10ms 0.0085% 84.42% 1421ms 1.20% VecMAXPY 0 0% 84.42% 1414ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1403ms 1.19% 85.61% 1411ms 1.19% VecMAXPY_Seq 1371ms 1.16% 86.77% 1371ms 1.16% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.77% 1172ms 0.99% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.77% 1172ms 0.99% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.77% 1172ms 0.99% boost_numeric_ublas_abs (inline) 1172ms 0.99% 87.76% 1172ms 0.99% std::abs (inline) 8ms 0.0068% 87.77% 1109ms 0.94% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.77% 1099ms 0.93% CuboidMeshConstructor::Construct 0 0% 87.77% 1098ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 87.77% 1098ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 233ms 0.2% 87.97% 1098ms 0.93% boost::numeric::ublas::indexing_matrix_assign 787ms 0.67% 88.63% 1034ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1031ms 0.87% 89.50% 1031ms 0.87% __memset_avx2_unaligned_erms 0 0% 89.50% 1021ms 0.86% PetscMemzero (inline) 2ms 0.0017% 89.51% 1001ms 0.85% Element::Element 2ms 0.0017% 89.51% 977ms 0.83% AbstractTetrahedralElement::CalculateJacobian 0 0% 89.51% 934ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 917ms 0.78% 90.28% 917ms 0.78% [libchaste_heart.so] 3ms 0.0025% 90.29% 877ms 0.74% VecDuplicate 2ms 0.0017% 90.29% 855ms 0.72% BidomainAssembler::ComputeMatrixTerm 4ms 0.0034% 90.29% 828ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 6ms 0.0051% 90.30% 793ms 0.67% VecScale 789ms 0.67% 90.97% 789ms 0.67% log_inline (inline) 2ms 0.0017% 90.97% 787ms 0.67% VecScale_Seq 782ms 0.66% 91.63% 782ms 0.66% dscal_ 0 0% 91.63% 776ms 0.66% AbstractBidomainSolver::FinaliseLinearSystem 224ms 0.19% 91.82% 773ms 0.65% AbstractBidomainSolver::CheckCompatibilityCondition 15ms 0.013% 91.83% 739ms 0.63% PetscMallocA 0 0% 91.83% 731ms 0.62% VecNorm 4ms 0.0034% 91.83% 724ms 0.61% PetscMallocAlign (partial-inline) 0 0% 91.83% 721ms 0.61% VecNorm_Seq 0 0% 91.83% 707ms 0.6% BidomainProblem::WriteOneStep 0 0% 91.83% 649ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)