File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 111357ms, 91.68% of 121464ms total Dropped 1106 nodes (cum <= 607.32ms) flat flat% sum% cum cum% 0 0% 0% 121449ms 100% __libc_start_call_main 0 0% 0% 121449ms 100% __libc_start_main_impl 0 0% 0% 121449ms 100% _start 0 0% 0% 121446ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 121446ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 121446ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 121446ms 100% main 0 0% 0% 121413ms 100% AbstractConvergenceTester::Converge 0 0% 0% 121413ms 100% CxxTest::RealTestDescription::run 0 0% 0% 121413ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 121413ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 121413ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 121413ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 120154ms 98.92% AbstractCardiacProblem::Solve 5ms 0.0041% 0.0074% 119293ms 98.21% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0041% 0.012% 67302ms 55.41% LinearSystem::Solve 2ms 0.0016% 0.013% 66734ms 54.94% KSPSolve 10ms 0.0082% 0.021% 66734ms 54.94% KSPSolve_Private 15ms 0.012% 0.034% 66304ms 54.59% KSPSolve_SYMMLQ 212ms 0.17% 0.21% 43244ms 35.60% AbstractCardiacTissue::SolveCellSystems 4ms 0.0033% 0.21% 37587ms 30.94% PCApply 4ms 0.0033% 0.21% 37579ms 30.94% PCApply_BJacobi_Singleblock 2ms 0.0016% 0.22% 34812ms 28.66% KSPSolve_PREONLY (partial-inline) 1ms 0.00082% 0.22% 33656ms 27.71% PCApply_ICC 9ms 0.0074% 0.22% 33655ms 27.71% MatSolve 33162ms 27.30% 27.53% 33646ms 27.70% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1513ms 1.25% 28.77% 33361ms 27.47% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0016% 28.77% 32460ms 26.72% KSP_PCApply.lto_priv.18 7004ms 5.77% 34.54% 28801ms 23.71% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0058% 34.55% 22567ms 18.58% MatMult 11ms 0.0091% 34.56% 22560ms 18.57% MatMult_SeqAIJ 22013ms 18.12% 52.68% 22558ms 18.57% MatMult_SeqAIJ_Inode (inline) 2046ms 1.68% 54.36% 14982ms 12.33% CardiacNewtonSolver::Solve 354ms 0.29% 54.65% 9015ms 7.42% AbstractCardiacTissue::UpdateCaches (inline) 4426ms 3.64% 58.30% 8723ms 7.18% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2067ms 1.70% 60.00% 8477ms 6.98% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1056ms 0.87% 60.87% 7795ms 6.42% BidomainSolver::SetupLinearSystem 1242ms 1.02% 61.89% 7592ms 6.25% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0016% 61.89% 7154ms 5.89% KSP_PCApply (partial-inline) 8ms 0.0066% 61.90% 6548ms 5.39% KSPConvergedDefault 6077ms 5.00% 66.90% 6077ms 5.00% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3972ms 3.27% 70.17% 4008ms 3.30% __ieee754_log_fma 0 0% 70.17% 3776ms 3.11% boost::numeric::ublas::norm_inf (inline) 2605ms 2.14% 72.32% 3776ms 3.11% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.32% 3776ms 3.11% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.32% 3776ms 3.11% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 10ms 0.0082% 72.33% 3420ms 2.82% MatNullSpaceRemove 3268ms 2.69% 75.02% 3268ms 2.69% __memcpy_avx_unaligned_erms 0 0% 75.02% 3227ms 2.66% PetscMemcpy (inline) 16ms 0.013% 75.03% 3155ms 2.60% std::pow (inline) 396ms 0.33% 75.36% 3109ms 2.56% __pow 1729ms 1.42% 76.78% 2887ms 2.38% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2831ms 2.33% 79.11% 2831ms 2.33% ddot_ 21ms 0.017% 79.13% 2782ms 2.29% VecCopy 7ms 0.0058% 79.13% 2758ms 2.27% VecCopy_Seq (partial-inline) 378ms 0.31% 79.44% 2704ms 2.23% __ieee754_pow_fma 21ms 0.017% 79.46% 2596ms 2.14% VecAXPY 7ms 0.0058% 79.47% 2575ms 2.12% VecAXPY_Seq 2555ms 2.10% 81.57% 2555ms 2.10% daxpy_ 5ms 0.0041% 81.57% 2316ms 1.91% VecDot 1ms 0.00082% 81.58% 2311ms 1.90% VecDot_Seq 1ms 0.00082% 81.58% 2310ms 1.90% VecXDot_Seq_Private.constprop.0 4ms 0.0033% 81.58% 2077ms 1.71% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00082% 81.58% 1966ms 1.62% VecMDot 15ms 0.012% 81.59% 1965ms 1.62% VecMXDot_Private 1935ms 1.59% 83.19% 1946ms 1.60% VecMDot_Seq 29ms 0.024% 83.21% 1722ms 1.42% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1508ms 1.24% 84.45% 1577ms 1.30% exp_inline (inline) 5ms 0.0041% 84.46% 1444ms 1.19% VecMAXPY 1434ms 1.18% 85.64% 1439ms 1.18% VecMAXPY_Seq 0 0% 85.64% 1424ms 1.17% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1253ms 1.03% 86.67% 1253ms 1.03% __memset_avx2_unaligned_erms 0 0% 86.67% 1231ms 1.01% PetscMemzero (inline) 893ms 0.74% 87.40% 1142ms 0.94% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 87.40% 1102ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 87.40% 1102ms 0.91% CuboidMeshConstructor::Construct 2ms 0.0016% 87.40% 1102ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 5ms 0.0041% 87.41% 1094ms 0.9% boost::numeric::ublas::matrix_assign (inline) 1092ms 0.9% 88.31% 1092ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 212ms 0.17% 88.48% 1087ms 0.89% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.48% 1085ms 0.89% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.48% 1085ms 0.89% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.48% 1085ms 0.89% boost_numeric_ublas_abs (inline) 1085ms 0.89% 89.38% 1085ms 0.89% std::abs (inline) 1ms 0.00082% 89.38% 1040ms 0.86% VecDuplicate 4ms 0.0033% 89.38% 1000ms 0.82% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0016% 89.38% 997ms 0.82% Element::Element 2ms 0.0016% 89.38% 936ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 13ms 0.011% 89.39% 934ms 0.77% VecScale 6ms 0.0049% 89.40% 921ms 0.76% VecScale_Seq 912ms 0.75% 90.15% 912ms 0.75% dscal_ 869ms 0.72% 90.86% 869ms 0.72% [libchaste_heart.so] 12ms 0.0099% 90.87% 862ms 0.71% PetscMallocA 2ms 0.0016% 90.88% 851ms 0.7% BidomainAssembler::ComputeMatrixTerm 6ms 0.0049% 90.88% 850ms 0.7% PetscMallocAlign (partial-inline) 8ms 0.0066% 90.89% 818ms 0.67% boost::numeric::ublas::c_matrix::c_matrix (inline) 0 0% 90.89% 808ms 0.67% BidomainProblem::WriteOneStep 2ms 0.0016% 90.89% 806ms 0.66% VecNorm 0 0% 90.89% 795ms 0.65% VecNorm_Seq 711ms 0.59% 91.47% 711ms 0.59% log_inline (inline) 3ms 0.0025% 91.48% 657ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 242ms 0.2% 91.68% 653ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.68% 653ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 3ms 0.0025% 91.68% 649ms 0.53% VecDuplicate_Seq