File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3719ms, 86.49% of 4300ms total Dropped 496 nodes (cum <= 21.50ms) flat flat% sum% cum cum% 0 0% 0% 4290ms 99.77% __libc_start_call_main 0 0% 0% 4290ms 99.77% __libc_start_main_impl 0 0% 0% 4290ms 99.77% _start 0 0% 0% 4287ms 99.70% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4287ms 99.70% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4287ms 99.70% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4287ms 99.70% main 0 0% 0% 4242ms 98.65% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4242ms 98.65% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4242ms 98.65% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.023% 0.023% 4233ms 98.44% AbstractCardiacProblem::Solve 0 0% 0.023% 4215ms 98.02% AbstractDynamicLinearPdeSolver::Solve 26ms 0.6% 0.63% 2085ms 48.49% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 0.67% 1751ms 40.72% LinearSystem::Solve 3ms 0.07% 0.74% 1698ms 39.49% KSPSolve 2ms 0.047% 0.79% 1695ms 39.42% KSPSolve_Private 2ms 0.047% 0.84% 1642ms 38.19% KSPSolve_SYMMLQ 18ms 0.42% 1.26% 1181ms 27.47% AbstractCardiacCell::ComputeExceptVoltage 3ms 0.07% 1.33% 1074ms 24.98% PCApply 2ms 0.047% 1.37% 1065ms 24.77% PCApply_BJacobi_Singleblock 22ms 0.51% 1.88% 1026ms 23.86% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 1.88% 896ms 20.84% KSPSolve_PREONLY (partial-inline) 69ms 1.60% 3.49% 871ms 20.26% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.49% 841ms 19.56% MatSolve 0 0% 3.49% 841ms 19.56% PCApply_ICC 822ms 19.12% 22.60% 833ms 19.37% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 22.60% 806ms 18.74% KSP_PCApply.lto_priv.18 193ms 4.49% 27.09% 791ms 18.40% CellLuoRudy1991FromCellML::EvaluateYDerivatives 17ms 0.4% 27.49% 729ms 16.95% AbstractCardiacTissue::UpdateCaches (inline) 334ms 7.77% 35.26% 722ms 16.79% __GI___exp 227ms 5.28% 40.53% 667ms 15.51% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.07% 40.60% 484ms 11.26% MatMult 97ms 2.26% 42.86% 464ms 10.79% MatMult_SeqAIJ (partial-inline) 363ms 8.44% 51.30% 381ms 8.86% MatMult_SeqAIJ_Inode (inline) 306ms 7.12% 58.42% 360ms 8.37% __ieee754_exp_fma 1ms 0.023% 58.44% 344ms 8.00% KSPConvergedDefault 0 0% 58.44% 336ms 7.81% KSP_PCApply (partial-inline) 62ms 1.44% 59.88% 335ms 7.79% BidomainSolver::SetupLinearSystem 1ms 0.023% 59.91% 218ms 5.07% std::pow (inline) 18ms 0.42% 60.33% 217ms 5.05% __pow 16ms 0.37% 60.70% 199ms 4.63% __ieee754_pow_fma 1ms 0.023% 60.72% 140ms 3.26% MatNullSpaceRemove 0 0% 60.72% 100ms 2.33% VecDuplicate 98ms 2.28% 63.00% 98ms 2.28% log_inline (inline) 31ms 0.72% 63.72% 97ms 2.26% MPI_Wtime 44ms 1.02% 64.74% 95ms 2.21% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 64.74% 90ms 2.09% VecMDot 6ms 0.14% 64.88% 90ms 2.09% VecMXDot_Private 88ms 2.05% 66.93% 88ms 2.05% ddot_ 1ms 0.023% 66.95% 75ms 1.74% VecDot 72ms 1.67% 68.63% 73ms 1.70% exp_inline (inline) 9ms 0.21% 68.84% 72ms 1.67% PetscLogEventBeginDefault 15ms 0.35% 69.19% 66ms 1.53% PetscLogEventEndDefault 0 0% 69.19% 66ms 1.53% VecDot_Seq 0 0% 69.19% 66ms 1.53% VecXDot_Seq_Private.constprop.0 1ms 0.023% 69.21% 66ms 1.53% __GI___clock_gettime 31ms 0.72% 69.93% 65ms 1.51% TimeStepper::TimeStepper 65ms 1.51% 71.44% 65ms 1.51% [[vdso]] 61ms 1.42% 72.86% 63ms 1.47% VecMDot_Seq 7ms 0.16% 73.02% 60ms 1.40% VecCopy 56ms 1.30% 74.33% 56ms 1.30% [libchaste_heart.so] 3ms 0.07% 74.40% 53ms 1.23% VecDuplicate_MPI 11ms 0.26% 74.65% 52ms 1.21% AbstractCardiacCell::SetVoltage (partial-inline) 52ms 1.21% 75.86% 52ms 1.21% __ieee754_log_fma 2ms 0.047% 75.91% 50ms 1.16% VecDestroy 2ms 0.047% 75.95% 49ms 1.14% VecMAXPY 3ms 0.07% 76.02% 48ms 1.12% VecCreate 3ms 0.07% 76.09% 48ms 1.12% VecNorm 0 0% 76.09% 47ms 1.09% VecDuplicate_Seq 1ms 0.023% 76.12% 46ms 1.07% PetscTimeSubtract (inline) 37ms 0.86% 76.98% 45ms 1.05% top12 (inline) 44ms 1.02% 78.00% 44ms 1.02% TimeStepper::CalculateNextTime 42ms 0.98% 78.98% 42ms 0.98% __memcpy_avx_unaligned_erms 0 0% 78.98% 40ms 0.93% CxxTest::RealWorldDescription::setUp 0 0% 78.98% 40ms 0.93% PMPI_Init_thread 0 0% 78.98% 40ms 0.93% PetscInitialize 0 0% 78.98% 40ms 0.93% PetscSetup::setUpWorld 0 0% 78.98% 40ms 0.93% PetscSetupUtils::CommonSetup 0 0% 78.98% 40ms 0.93% PetscSetupUtils::InitialisePetsc 0 0% 78.98% 40ms 0.93% ompi_mpi_init 34ms 0.79% 79.77% 39ms 0.91% AbstractParameterisedSystem::SetAnyVariable 3ms 0.07% 79.84% 39ms 0.91% PetscMallocA 30ms 0.7% 80.53% 38ms 0.88% AbstractOneStepIvpOdeSolver::Solve 0 0% 80.53% 37ms 0.86% 0 0% 80.53% 37ms 0.86% PetscMemcpy (inline) 9ms 0.21% 80.74% 36ms 0.84% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.74% 36ms 0.84% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.023% 80.77% 36ms 0.84% PetscMallocAlign (partial-inline) 0 0% 80.77% 34ms 0.79% VecNorm_Seq 33ms 0.77% 81.53% 33ms 0.77% VecMAXPY_Seq 1ms 0.023% 81.56% 32ms 0.74% VecAXPY 30ms 0.7% 82.26% 30ms 0.7% asuint64 (inline) 15ms 0.35% 82.60% 29ms 0.67% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 26ms 0.6% 83.21% 29ms 0.67% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.023% 83.23% 29ms 0.67% VecCopy_Seq (partial-inline) 29ms 0.67% 83.91% 29ms 0.67% [libm.so.6] 28ms 0.65% 84.56% 28ms 0.65% RegularStimulus::GetStimulus 28ms 0.65% 85.21% 28ms 0.65% __memset_avx2_unaligned_erms 0 0% 85.21% 27ms 0.63% PetscMemzero (inline) 2ms 0.047% 85.26% 27ms 0.63% VecCreate_MPI_Private 24ms 0.56% 85.81% 24ms 0.56% DistributedVector::Iterator::operator!= 0 0% 85.81% 23ms 0.53% VecNorm_MPI 0 0% 85.81% 23ms 0.53% VecNorm_MPI_Default.constprop.0 4ms 0.093% 85.91% 23ms 0.53% VecSet 0 0% 85.91% 23ms 0.53% orte_init 13ms 0.3% 86.21% 23ms 0.53% std::__cxx11::basic_string::basic_string 5ms 0.12% 86.33% 22ms 0.51% PetscHeaderCreate_Private 7ms 0.16% 86.49% 22ms 0.51% TimeStepper::AdvanceOneTimeStep