File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3677ms, 86.72% of 4240ms total Dropped 464 nodes (cum <= 21.20ms) flat flat% sum% cum cum% 0 0% 0% 4233ms 99.83% __libc_start_call_main 0 0% 0% 4233ms 99.83% __libc_start_main_impl 0 0% 0% 4233ms 99.83% _start 0 0% 0% 4230ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4230ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4230ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4230ms 99.76% main 0 0% 0% 4198ms 99.01% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4198ms 99.01% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4198ms 99.01% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4192ms 98.87% AbstractCardiacProblem::Solve 2ms 0.047% 0.071% 4180ms 98.58% AbstractDynamicLinearPdeSolver::Solve 15ms 0.35% 0.42% 2424ms 57.17% AbstractCardiacTissue::SolveCellSystems 47ms 1.11% 1.53% 1443ms 34.03% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.53% 1435ms 33.84% LinearSystem::Solve 0 0% 1.53% 1390ms 32.78% KSPSolve 6ms 0.14% 1.67% 1390ms 32.78% KSPSolve_Private 0 0% 1.67% 1328ms 31.32% KSPSolve_SYMMLQ 21ms 0.5% 2.17% 1207ms 28.47% AbstractOneStepIvpOdeSolver::InternalSolve 67ms 1.58% 3.75% 1010ms 23.82% EulerIvpOdeSolver::CalculateNextYValue 267ms 6.30% 10.05% 930ms 21.93% CellLuoRudy1991FromCellML::EvaluateYDerivatives 2ms 0.047% 10.09% 827ms 19.50% PCApply 0 0% 10.09% 818ms 19.29% PCApply_BJacobi_Singleblock 371ms 8.75% 18.84% 818ms 19.29% __GI___exp 29ms 0.68% 19.53% 762ms 17.97% AbstractCardiacTissue::UpdateCaches (inline) 237ms 5.59% 25.12% 705ms 16.63% CellLuoRudy1991FromCellML::GetIIonic 0 0% 25.12% 675ms 15.92% KSPSolve_PREONLY (partial-inline) 2ms 0.047% 25.17% 628ms 14.81% MatSolve 0 0% 25.17% 628ms 14.81% PCApply_ICC 617ms 14.55% 39.72% 621ms 14.65% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 39.72% 560ms 13.21% KSP_PCApply.lto_priv.18 410ms 9.67% 49.39% 430ms 10.14% __ieee754_exp_fma 1ms 0.024% 49.41% 405ms 9.55% MatMult 8ms 0.19% 49.60% 400ms 9.43% MatMult_SeqAIJ (partial-inline) 389ms 9.17% 58.77% 400ms 9.43% MatMult_SeqAIJ_Inode (inline) 1ms 0.024% 58.80% 338ms 7.97% KSPConvergedDefault 0 0% 58.80% 334ms 7.88% KSP_PCApply (partial-inline) 59ms 1.39% 60.19% 278ms 6.56% BidomainSolver::SetupLinearSystem 1ms 0.024% 60.21% 237ms 5.59% std::pow (inline) 20ms 0.47% 60.68% 235ms 5.54% __pow 32ms 0.75% 61.44% 214ms 5.05% __ieee754_pow_fma 72ms 1.70% 63.14% 161ms 3.80% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 63.16% 119ms 2.81% MatNullSpaceRemove 103ms 2.43% 65.59% 103ms 2.43% log_inline (inline) 1ms 0.024% 65.61% 102ms 2.41% VecDuplicate 22ms 0.52% 66.13% 95ms 2.24% MPI_Wtime 37ms 0.87% 67.00% 78ms 1.84% TimeStepper::TimeStepper 2ms 0.047% 67.05% 73ms 1.72% __GI___clock_gettime 14ms 0.33% 67.38% 72ms 1.70% PetscLogEventBeginDefault 72ms 1.70% 69.08% 72ms 1.70% exp_inline (inline) 71ms 1.67% 70.75% 71ms 1.67% [[vdso]] 1ms 0.024% 70.78% 66ms 1.56% VecMDot 3ms 0.071% 70.85% 65ms 1.53% VecMXDot_Private 62ms 1.46% 72.31% 62ms 1.46% TimeStepper::CalculateNextTime 6ms 0.14% 72.45% 60ms 1.42% VecCopy 56ms 1.32% 73.77% 56ms 1.32% ddot_ 54ms 1.27% 75.05% 55ms 1.30% __ieee754_log_fma 3ms 0.071% 75.12% 53ms 1.25% VecDuplicate_MPI 4ms 0.094% 75.21% 52ms 1.23% VecMAXPY 30ms 0.71% 75.92% 51ms 1.20% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 41ms 0.97% 76.89% 50ms 1.18% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 6ms 0.14% 77.03% 50ms 1.18% PetscLogEventEndDefault 9ms 0.21% 77.24% 48ms 1.13% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 77.26% 48ms 1.13% VecDestroy 1ms 0.024% 77.29% 48ms 1.13% VecDuplicate_Seq 34ms 0.8% 78.09% 46ms 1.08% AbstractOneStepIvpOdeSolver::Solve 1ms 0.024% 78.11% 46ms 1.08% VecDot 2ms 0.047% 78.16% 44ms 1.04% VecCreate 3ms 0.071% 78.23% 43ms 1.01% VecAXPY 2ms 0.047% 78.28% 41ms 0.97% VecNorm 13ms 0.31% 78.58% 40ms 0.94% TimeStepper::AdvanceOneTimeStep 0 0% 78.58% 40ms 0.94% VecDot_Seq 39ms 0.92% 79.50% 40ms 0.94% VecMDot_Seq 0 0% 79.50% 40ms 0.94% VecXDot_Seq_Private.constprop.0 5ms 0.12% 79.62% 39ms 0.92% PetscMallocA 37ms 0.87% 80.50% 37ms 0.87% std::isinf (inline) 0 0% 80.50% 36ms 0.85% AbstractBidomainSolver::FinaliseLinearSystem 8ms 0.19% 80.68% 35ms 0.83% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.047% 80.73% 34ms 0.8% PetscMallocAlign 0 0% 80.73% 33ms 0.78% VecNorm_Seq 14ms 0.33% 81.06% 33ms 0.78% std::__cxx11::basic_string::basic_string 29ms 0.68% 81.75% 32ms 0.75% AbstractParameterisedSystem::SetAnyVariable 0 0% 81.75% 32ms 0.75% PetscMemcpy (inline) 32ms 0.75% 82.50% 32ms 0.75% __memcpy_avx_unaligned_erms 30ms 0.71% 83.21% 30ms 0.71% VecMAXPY_Seq 30ms 0.71% 83.92% 30ms 0.71% [libchaste_heart.so] 23ms 0.54% 84.46% 28ms 0.66% AbstractParameterisedSystem::GetAnyVariable 0 0% 84.46% 28ms 0.66% CxxTest::RealWorldDescription::setUp 28ms 0.66% 85.12% 28ms 0.66% DistributedVector::Iterator::operator!= 0 0% 85.12% 28ms 0.66% PMPI_Init_thread 0 0% 85.12% 28ms 0.66% PetscInitialize 0 0% 85.12% 28ms 0.66% PetscSetup::setUpWorld 0 0% 85.12% 28ms 0.66% PetscSetupUtils::CommonSetup 0 0% 85.12% 28ms 0.66% PetscSetupUtils::InitialisePetsc 3ms 0.071% 85.19% 28ms 0.66% VecCreate_MPI_Private 0 0% 85.19% 28ms 0.66% ompi_mpi_init 1ms 0.024% 85.21% 27ms 0.64% VecCopy_Seq (partial-inline) 0 0% 85.21% 26ms 0.61% VecNorm_MPI 0 0% 85.21% 26ms 0.61% VecNorm_MPI_Default.constprop.0 16ms 0.38% 85.59% 26ms 0.61% top12 (inline) 10ms 0.24% 85.83% 24ms 0.57% AbstractCardiacCell::GetVoltage (partial-inline) 24ms 0.57% 86.39% 24ms 0.57% DistributedVector::Stripe::operator[] (inline) 4ms 0.094% 86.49% 23ms 0.54% VecSetType 0 0% 86.49% 22ms 0.52% 8ms 0.19% 86.67% 22ms 0.52% __GI___libc_malloc 2ms 0.047% 86.72% 22ms 0.52% __posix_memalign