File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3597ms, 85.50% of 4207ms total Dropped 487 nodes (cum <= 21.04ms) flat flat% sum% cum cum% 0 0% 0% 4198ms 99.79% __libc_start_call_main 0 0% 0% 4198ms 99.79% __libc_start_main_impl 0 0% 0% 4198ms 99.79% _start 0 0% 0% 4195ms 99.71% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4195ms 99.71% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4195ms 99.71% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4195ms 99.71% main 0 0% 0% 4153ms 98.72% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4153ms 98.72% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4153ms 98.72% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.048% 0.048% 4145ms 98.53% AbstractCardiacProblem::Solve 1ms 0.024% 0.071% 4129ms 98.15% AbstractDynamicLinearPdeSolver::Solve 13ms 0.31% 0.38% 2348ms 55.81% AbstractCardiacTissue::SolveCellSystems 0 0% 0.38% 1485ms 35.30% LinearSystem::Solve 0 0% 0.38% 1434ms 34.09% KSPSolve 8ms 0.19% 0.57% 1434ms 34.09% KSPSolve_Private 2ms 0.048% 0.62% 1385ms 32.92% KSPSolve_SYMMLQ 34ms 0.81% 1.43% 1375ms 32.68% AbstractCardiacCell::ComputeExceptVoltage 31ms 0.74% 2.16% 1163ms 27.64% AbstractOneStepIvpOdeSolver::InternalSolve 70ms 1.66% 3.83% 983ms 23.37% EulerIvpOdeSolver::CalculateNextYValue 264ms 6.28% 10.10% 904ms 21.49% CellLuoRudy1991FromCellML::EvaluateYDerivatives 2ms 0.048% 10.15% 866ms 20.58% PCApply 0 0% 10.15% 857ms 20.37% PCApply_BJacobi_Singleblock 374ms 8.89% 19.04% 815ms 19.37% __GI___exp 31ms 0.74% 19.78% 760ms 18.07% AbstractCardiacTissue::UpdateCaches (inline) 260ms 6.18% 25.96% 700ms 16.64% CellLuoRudy1991FromCellML::GetIIonic 0 0% 25.96% 699ms 16.62% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 25.98% 650ms 15.45% PCApply_ICC 1ms 0.024% 26.00% 649ms 15.43% MatSolve 633ms 15.05% 41.05% 641ms 15.24% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1ms 0.024% 41.07% 623ms 14.81% KSP_PCApply.lto_priv.18 387ms 9.20% 50.27% 422ms 10.03% __ieee754_exp_fma 5ms 0.12% 50.39% 372ms 8.84% MatMult 2ms 0.048% 50.44% 365ms 8.68% MatMult_SeqAIJ 357ms 8.49% 58.93% 365ms 8.68% MatMult_SeqAIJ_Inode (inline) 1ms 0.024% 58.95% 341ms 8.11% KSPConvergedDefault 0 0% 58.95% 312ms 7.42% KSP_PCApply (partial-inline) 48ms 1.14% 60.09% 248ms 5.89% BidomainSolver::SetupLinearSystem 1ms 0.024% 60.11% 208ms 4.94% std::pow (inline) 18ms 0.43% 60.54% 207ms 4.92% __pow 29ms 0.69% 61.23% 189ms 4.49% __ieee754_pow_fma 77ms 1.83% 63.06% 158ms 3.76% CellLuoRudy1991FromCellML::VerifyStateVariables 3ms 0.071% 63.13% 127ms 3.02% MatNullSpaceRemove 1ms 0.024% 63.16% 98ms 2.33% VecDuplicate 20ms 0.48% 63.63% 89ms 2.12% MPI_Wtime 0 0% 63.63% 87ms 2.07% VecMDot 6ms 0.14% 63.77% 87ms 2.07% VecMXDot_Private 78ms 1.85% 65.63% 78ms 1.85% log_inline (inline) 73ms 1.74% 67.36% 74ms 1.76% exp_inline (inline) 1ms 0.024% 67.39% 69ms 1.64% __GI___clock_gettime 68ms 1.62% 69.00% 68ms 1.62% [[vdso]] 11ms 0.26% 69.27% 65ms 1.55% PetscLogEventBeginDefault 17ms 0.4% 69.67% 64ms 1.52% PetscLogEventEndDefault 28ms 0.67% 70.34% 64ms 1.52% TimeStepper::TimeStepper 1ms 0.024% 70.36% 62ms 1.47% VecDestroy 61ms 1.45% 71.81% 61ms 1.45% ddot_ 7ms 0.17% 71.98% 57ms 1.35% VecCopy 29ms 0.69% 72.66% 55ms 1.31% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 50ms 1.19% 73.85% 55ms 1.31% VecMDot_Seq 3ms 0.071% 73.92% 51ms 1.21% VecNorm 43ms 1.02% 74.95% 50ms 1.19% AbstractOneStepIvpOdeSolver::Solve 4ms 0.095% 75.04% 50ms 1.19% VecCreate 1ms 0.024% 75.07% 49ms 1.16% VecDuplicate_MPI 0 0% 75.07% 48ms 1.14% VecDot 1ms 0.024% 75.09% 48ms 1.14% VecDuplicate_Seq 12ms 0.29% 75.37% 46ms 1.09% AbstractCardiacCell::SetVoltage (partial-inline) 4ms 0.095% 75.47% 45ms 1.07% VecAXPY 44ms 1.05% 76.52% 44ms 1.05% TimeStepper::CalculateNextTime 1ms 0.024% 76.54% 43ms 1.02% KSP_RemoveNullSpace (inline) 7ms 0.17% 76.71% 43ms 1.02% PetscMallocA 0 0% 76.71% 43ms 1.02% VecDot_Seq 0 0% 76.71% 43ms 1.02% VecXDot_Seq_Private.constprop.0 41ms 0.97% 77.68% 41ms 0.97% __ieee754_log_fma 13ms 0.31% 77.99% 40ms 0.95% top12 (inline) 14ms 0.33% 78.32% 39ms 0.93% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.32% 39ms 0.93% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 78.32% 39ms 0.93% VecNorm_Seq 39ms 0.93% 79.25% 39ms 0.93% __memcpy_avx_unaligned_erms 30ms 0.71% 79.96% 37ms 0.88% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 79.96% 37ms 0.88% CxxTest::RealWorldDescription::setUp 0 0% 79.96% 37ms 0.88% PetscInitialize 0 0% 79.96% 37ms 0.88% PetscSetup::setUpWorld 0 0% 79.96% 37ms 0.88% PetscSetupUtils::CommonSetup 0 0% 79.96% 37ms 0.88% PetscSetupUtils::InitialisePetsc 2ms 0.048% 80.01% 37ms 0.88% VecMAXPY 0 0% 80.01% 36ms 0.86% PMPI_Init_thread 3ms 0.071% 80.08% 36ms 0.86% PetscMallocAlign 0 0% 80.08% 36ms 0.86% ompi_mpi_init 34ms 0.81% 80.89% 34ms 0.81% std::isinf (inline) 0 0% 80.89% 33ms 0.78% VecNorm_MPI 0 0% 80.89% 33ms 0.78% VecNorm_MPI_Default.constprop.0 4ms 0.095% 80.98% 32ms 0.76% VecDestroy_MPI 14ms 0.33% 81.32% 31ms 0.74% TimeStepper::AdvanceOneTimeStep 31ms 0.74% 82.05% 31ms 0.74% asuint64 (inline) 12ms 0.29% 82.34% 31ms 0.74% std::__cxx11::basic_string::basic_string 0 0% 82.34% 30ms 0.71% PetscMemcpy (inline) 30ms 0.71% 83.05% 30ms 0.71% [libchaste_heart.so] 0 0% 83.05% 28ms 0.67% 25ms 0.59% 83.65% 28ms 0.67% AbstractParameterisedSystem::SetAnyVariable 28ms 0.67% 84.31% 28ms 0.67% DistributedVector::Stripe::operator[] (inline) 1ms 0.024% 84.34% 27ms 0.64% VecAXPY_Seq 19ms 0.45% 84.79% 25ms 0.59% AbstractParameterisedSystem::GetAnyVariable 1ms 0.024% 84.81% 24ms 0.57% VecSetType 0 0% 84.81% 24ms 0.57% orte_init 2ms 0.048% 84.86% 23ms 0.55% __posix_memalign 23ms 0.55% 85.41% 23ms 0.55% daxpy_ 0 0% 85.41% 22ms 0.52% VecCopy_Seq (partial-inline) 4ms 0.095% 85.50% 22ms 0.52% __GI___libc_malloc