File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 115307ms, 91.81% of 125591ms total Dropped 1154 nodes (cum <= 627.96ms) flat flat% sum% cum cum% 0 0% 0% 125576ms 100% __libc_start_call_main 0 0% 0% 125576ms 100% __libc_start_main_impl 0 0% 0% 125576ms 100% _start 0 0% 0% 125574ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 125574ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 125574ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 125574ms 100% main 0 0% 0% 125537ms 100% AbstractConvergenceTester::Converge 0 0% 0% 125537ms 100% CxxTest::RealTestDescription::run 0 0% 0% 125537ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 125537ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 125537ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 125537ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 8ms 0.0064% 0.0064% 124234ms 98.92% AbstractCardiacProblem::Solve 7ms 0.0056% 0.012% 123263ms 98.15% AbstractDynamicLinearPdeSolver::Solve 8ms 0.0064% 0.018% 70983ms 56.52% LinearSystem::Solve 2ms 0.0016% 0.02% 70353ms 56.02% KSPSolve 17ms 0.014% 0.033% 70351ms 56.02% KSPSolve_Private 12ms 0.0096% 0.043% 69839ms 55.61% KSPSolve_SYMMLQ 195ms 0.16% 0.2% 42931ms 34.18% AbstractCardiacTissue::SolveCellSystems 8ms 0.0064% 0.2% 38409ms 30.58% PCApply 3ms 0.0024% 0.21% 38389ms 30.57% PCApply_BJacobi_Singleblock 2ms 0.0016% 0.21% 35550ms 28.31% KSPSolve_PREONLY (partial-inline) 1ms 0.0008% 0.21% 34316ms 27.32% PCApply_ICC 4ms 0.0032% 0.21% 34315ms 27.32% MatSolve 33819ms 26.93% 27.14% 34311ms 27.32% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 2ms 0.0016% 27.14% 33140ms 26.39% KSP_PCApply.lto_priv.18 1368ms 1.09% 28.23% 33018ms 26.29% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 6858ms 5.46% 33.69% 28706ms 22.86% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 11ms 0.0088% 33.70% 24805ms 19.75% MatMult 249ms 0.2% 33.90% 24794ms 19.74% MatMult_SeqAIJ (partial-inline) 24264ms 19.32% 53.22% 24791ms 19.74% MatMult_SeqAIJ_Inode (inline) 1943ms 1.55% 54.77% 14846ms 11.82% CardiacNewtonSolver::Solve 324ms 0.26% 55.02% 9082ms 7.23% AbstractCardiacTissue::UpdateCaches (inline) 4516ms 3.60% 58.62% 8697ms 6.92% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1933ms 1.54% 60.16% 8537ms 6.80% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1095ms 0.87% 61.03% 8336ms 6.64% BidomainSolver::SetupLinearSystem 1250ms 1% 62.03% 7686ms 6.12% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.0008% 62.03% 7487ms 5.96% KSP_PCApply (partial-inline) 4ms 0.0032% 62.03% 6845ms 5.45% KSPConvergedDefault 6164ms 4.91% 66.94% 6164ms 4.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3904ms 3.11% 70.05% 3950ms 3.15% __ieee754_log_fma 0 0% 70.05% 3751ms 2.99% boost::numeric::ublas::norm_inf (inline) 2516ms 2.00% 72.05% 3751ms 2.99% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.05% 3751ms 2.99% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.05% 3751ms 2.99% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3700ms 2.95% 75.00% 3700ms 2.95% __memcpy_avx_unaligned_erms 8ms 0.0064% 75.00% 3686ms 2.93% MatNullSpaceRemove 0 0% 75.00% 3670ms 2.92% PetscMemcpy (inline) 31ms 0.025% 75.03% 3222ms 2.57% VecCopy 1ms 0.0008% 75.03% 3188ms 2.54% VecCopy_Seq (partial-inline) 29ms 0.023% 75.05% 3114ms 2.48% std::pow (inline) 380ms 0.3% 75.35% 3080ms 2.45% __pow 3046ms 2.43% 77.78% 3046ms 2.43% ddot_ 1667ms 1.33% 79.11% 2775ms 2.21% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 16ms 0.013% 79.12% 2745ms 2.19% VecAXPY 5ms 0.004% 79.12% 2729ms 2.17% VecAXPY_Seq 2712ms 2.16% 81.28% 2712ms 2.16% daxpy_ 367ms 0.29% 81.57% 2686ms 2.14% __ieee754_pow_fma 7ms 0.0056% 81.58% 2498ms 1.99% VecDot 0 0% 81.58% 2491ms 1.98% VecDot_Seq 2ms 0.0016% 81.58% 2491ms 1.98% VecXDot_Seq_Private.constprop.0 3ms 0.0024% 81.58% 2129ms 1.70% VecMDot 14ms 0.011% 81.60% 2126ms 1.69% VecMXDot_Private 2097ms 1.67% 83.26% 2104ms 1.68% VecMDot_Seq 5ms 0.004% 83.27% 2102ms 1.67% AbstractFeVolumeIntegralAssembler::DoAssemble 33ms 0.026% 83.29% 1771ms 1.41% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1543ms 1.23% 84.52% 1599ms 1.27% exp_inline (inline) 7ms 0.0056% 84.53% 1549ms 1.23% VecMAXPY 1535ms 1.22% 85.75% 1542ms 1.23% VecMAXPY_Seq 1447ms 1.15% 86.90% 1447ms 1.15% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.90% 1430ms 1.14% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1330ms 1.06% 87.96% 1330ms 1.06% __memset_avx2_unaligned_erms 0 0% 87.96% 1321ms 1.05% PetscMemzero (inline) 5ms 0.004% 87.97% 1164ms 0.93% VecDuplicate 0 0% 87.97% 1138ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.97% 1138ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.97% 1138ms 0.91% boost_numeric_ublas_abs (inline) 1138ms 0.91% 88.87% 1138ms 0.91% std::abs (inline) 0 0% 88.87% 1132ms 0.9% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.87% 1132ms 0.9% CuboidMeshConstructor::Construct 1ms 0.0008% 88.87% 1132ms 0.9% DistributedTetrahedralMesh::ConstructCuboid 6ms 0.0048% 88.88% 1111ms 0.88% boost::numeric::ublas::matrix_assign (inline) 202ms 0.16% 89.04% 1099ms 0.88% boost::numeric::ublas::indexing_matrix_assign 770ms 0.61% 89.65% 1056ms 0.84% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 89.65% 1021ms 0.81% Element::Element 3ms 0.0024% 89.65% 1004ms 0.8% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0016% 89.66% 948ms 0.75% AbstractTetrahedralElement::AbstractTetrahedralElement 12ms 0.0096% 89.67% 945ms 0.75% PetscMallocA 7ms 0.0056% 89.67% 933ms 0.74% PetscMallocAlign (partial-inline) 10ms 0.008% 89.68% 905ms 0.72% VecScale 0 0% 89.68% 896ms 0.71% BidomainProblem::WriteOneStep 4ms 0.0032% 89.68% 895ms 0.71% VecScale_Seq 887ms 0.71% 90.39% 887ms 0.71% dscal_ 8ms 0.0064% 90.40% 872ms 0.69% BidomainAssembler::ComputeMatrixTerm 5ms 0.004% 90.40% 859ms 0.68% boost::numeric::ublas::c_matrix::c_matrix (inline) 5ms 0.004% 90.40% 856ms 0.68% VecNorm 856ms 0.68% 91.08% 856ms 0.68% [libchaste_heart.so] 1ms 0.0008% 91.09% 840ms 0.67% VecNorm_Seq 15ms 0.012% 91.10% 714ms 0.57% VecDuplicate_Seq 680ms 0.54% 91.64% 680ms 0.54% log_inline (inline) 0 0% 91.64% 672ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 6ms 0.0048% 91.64% 662ms 0.53% AbstractBidomainSolver::FinaliseLinearSystem 202ms 0.16% 91.80% 655ms 0.52% AbstractBidomainSolver::CheckCompatibilityCondition 3ms 0.0024% 91.81% 655ms 0.52% H5Dwrite 6ms 0.0048% 91.81% 629ms 0.5% H5D__write