File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3736ms, 86.68% of 4310ms total Dropped 499 nodes (cum <= 21.55ms) flat flat% sum% cum cum% 0 0% 0% 4301ms 99.79% __libc_start_call_main 0 0% 0% 4301ms 99.79% __libc_start_main_impl 0 0% 0% 4301ms 99.79% _start 0 0% 0% 4297ms 99.70% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4297ms 99.70% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4297ms 99.70% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4297ms 99.70% main 0 0% 0% 4249ms 98.58% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4249ms 98.58% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4249ms 98.58% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.023% 0.023% 4240ms 98.38% AbstractCardiacProblem::Solve 0 0% 0.023% 4228ms 98.10% AbstractDynamicLinearPdeSolver::Solve 18ms 0.42% 0.44% 2076ms 48.17% AbstractCardiacTissue::SolveCellSystems 0 0% 0.44% 1794ms 41.62% LinearSystem::Solve 0 0% 0.44% 1733ms 40.21% KSPSolve 12ms 0.28% 0.72% 1733ms 40.21% KSPSolve_Private 2ms 0.046% 0.77% 1699ms 39.42% KSPSolve_CG 54ms 1.25% 2.02% 1417ms 32.88% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 279ms 6.47% 8.49% 1263ms 29.30% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.07% 8.56% 993ms 23.04% PCApply 1ms 0.023% 8.58% 989ms 22.95% PCApply_BJacobi_Singleblock 0 0% 8.58% 812ms 18.84% KSPSolve_PREONLY (partial-inline) 0 0% 8.58% 782ms 18.14% KSP_PCApply.lto_priv.7 3ms 0.07% 8.65% 750ms 17.40% MatSolve 0 0% 8.65% 750ms 17.40% PCApply_ICC 733ms 17.01% 25.66% 735ms 17.05% MatSolve_SeqSBAIJ_1_NaturalOrdering 4ms 0.093% 25.75% 617ms 14.32% MatMult 7ms 0.16% 25.92% 608ms 14.11% MatMult_SeqAIJ (partial-inline) 587ms 13.62% 39.54% 608ms 14.11% MatMult_SeqAIJ_Inode (inline) 14ms 0.32% 39.86% 582ms 13.50% AbstractCardiacTissue::UpdateCaches (inline) 71ms 1.65% 41.51% 571ms 13.25% CardiacNewtonSolver::Solve 134ms 3.11% 44.62% 543ms 12.60% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 188ms 4.36% 48.98% 349ms 8.10% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 81ms 1.88% 50.86% 332ms 7.70% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 47ms 1.09% 51.95% 304ms 7.05% BidomainSolver::SetupLinearSystem 0 0% 51.95% 294ms 6.82% KSP_PCApply (partial-inline) 3ms 0.07% 52.02% 291ms 6.75% KSPConvergedDefault 28ms 0.65% 52.67% 258ms 5.99% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 238ms 5.52% 58.19% 238ms 5.52% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 0 0% 58.19% 222ms 5.15% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 38ms 0.88% 59.07% 222ms 5.15% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 179ms 4.15% 63.23% 180ms 4.18% __ieee754_log_fma 1ms 0.023% 63.25% 178ms 4.13% std::pow (inline) 28ms 0.65% 63.90% 176ms 4.08% __pow 3ms 0.07% 63.97% 151ms 3.50% MatNullSpaceRemove 60ms 1.39% 65.36% 149ms 3.46% __GI___exp 21ms 0.49% 65.85% 145ms 3.36% __ieee754_pow_fma 0 0% 65.85% 139ms 3.23% boost::numeric::ublas::norm_inf (inline) 96ms 2.23% 68.07% 139ms 3.23% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 68.07% 139ms 3.23% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 68.07% 139ms 3.23% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 120ms 2.78% 70.86% 120ms 2.78% ddot_ 0 0% 70.86% 102ms 2.37% VecDuplicate 0 0% 70.86% 93ms 2.16% VecMDot 5ms 0.12% 70.97% 93ms 2.16% VecMXDot_Private 58ms 1.35% 72.32% 91ms 2.11% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 1ms 0.023% 72.34% 87ms 2.02% VecTDot 1ms 0.023% 72.37% 80ms 1.86% VecNorm 79ms 1.83% 74.20% 80ms 1.86% exp_inline (inline) 25ms 0.58% 74.78% 79ms 1.83% MPI_Wtime 0 0% 74.78% 72ms 1.67% VecTDot_Seq 0 0% 74.78% 72ms 1.67% VecXDot_Seq_Private.constprop.0 0 0% 74.78% 67ms 1.55% VecNorm_Seq 14ms 0.32% 75.10% 61ms 1.42% PetscLogEventEndDefault 56ms 1.30% 76.40% 61ms 1.42% VecMDot_Seq 10ms 0.23% 76.64% 60ms 1.39% PetscLogEventBeginDefault 1ms 0.023% 76.66% 55ms 1.28% VecDuplicate_Seq 3ms 0.07% 76.73% 55ms 1.28% VecMAXPY 54ms 1.25% 77.98% 54ms 1.25% [[vdso]] 0 0% 77.98% 54ms 1.25% __GI___clock_gettime 52ms 1.21% 79.19% 52ms 1.21% [libchaste_heart.so] 36ms 0.84% 80.02% 51ms 1.18% __ieee754_exp_fma 12ms 0.28% 80.30% 49ms 1.14% PetscMallocA 1ms 0.023% 80.32% 47ms 1.09% AbstractBidomainSolver::FinaliseLinearSystem 5ms 0.12% 80.44% 47ms 1.09% VecDuplicate_MPI 13ms 0.3% 80.74% 45ms 1.04% AbstractBidomainSolver::CheckCompatibilityCondition 45ms 1.04% 81.79% 45ms 1.04% [libm.so.6] 0 0% 81.79% 44ms 1.02% CxxTest::RealWorldDescription::setUp 0 0% 81.79% 44ms 1.02% PetscInitialize 0 0% 81.79% 44ms 1.02% PetscSetup::setUpWorld 0 0% 81.79% 44ms 1.02% PetscSetupUtils::CommonSetup 0 0% 81.79% 44ms 1.02% PetscSetupUtils::InitialisePetsc 1ms 0.023% 81.81% 44ms 1.02% VecDestroy 0 0% 81.81% 43ms 1% PMPI_Init_thread 3ms 0.07% 81.88% 43ms 1% VecCreate 0 0% 81.88% 43ms 1% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 81.88% 43ms 1% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 81.88% 43ms 1% boost_numeric_ublas_abs (inline) 0 0% 81.88% 43ms 1% ompi_mpi_init 43ms 1% 82.88% 43ms 1% std::abs (inline) 41ms 0.95% 83.83% 41ms 0.95% log_inline (inline) 37ms 0.86% 84.69% 37ms 0.86% DistributedVector::Iterator::operator!= 2ms 0.046% 84.73% 37ms 0.86% PetscMallocAlign 1ms 0.023% 84.76% 34ms 0.79% 31ms 0.72% 85.48% 32ms 0.74% VecMAXPY_Seq 0 0% 85.48% 28ms 0.65% VecNorm_MPI 0 0% 85.48% 28ms 0.65% VecNorm_MPI_Default.constprop.0 1ms 0.023% 85.50% 28ms 0.65% VecSetType 0 0% 85.50% 27ms 0.63% __posix_memalign 0 0% 85.50% 27ms 0.63% orte_init 10ms 0.23% 85.73% 26ms 0.6% AbstractCardiacCell::SetVoltage 9ms 0.21% 85.94% 26ms 0.6% __GI___libc_malloc 2ms 0.046% 85.99% 25ms 0.58% VecCopy 1ms 0.023% 86.01% 24ms 0.56% VecCreate_MPI_Private 3ms 0.07% 86.08% 23ms 0.53% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#3}::operator() (inline) 4ms 0.093% 86.17% 23ms 0.53% PetscHeaderDestroy_Private 0 0% 86.17% 22ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 22ms 0.51% 86.68% 22ms 0.51% DistributedVector::Stripe::operator[] (inline)