File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12975ms, 85.87% of 15110ms total Dropped 780 nodes (cum <= 75.55ms) flat flat% sum% cum cum% 0 0% 0% 15098ms 99.92% __libc_start_call_main 0 0% 0% 15098ms 99.92% __libc_start_main_impl 0 0% 0% 15098ms 99.92% _start 0 0% 0% 15094ms 99.89% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 15094ms 99.89% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 15094ms 99.89% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 15094ms 99.89% main 0 0% 0% 15047ms 99.58% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 15047ms 99.58% CxxTest::TestRunner::runTest (inline) 0 0% 0% 15047ms 99.58% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 0 0% 0% 15016ms 99.38% AbstractCardiacProblem::Solve 2ms 0.013% 0.013% 11540ms 76.37% AbstractDynamicLinearPdeSolver::Solve 100ms 0.66% 0.68% 9219ms 61.01% AbstractCardiacTissue::SolveCellSystems 91ms 0.6% 1.28% 5484ms 36.29% AbstractCardiacCell::ComputeExceptVoltage 109ms 0.72% 2.00% 4847ms 32.08% AbstractOneStepIvpOdeSolver::InternalSolve 156ms 1.03% 3.03% 4189ms 27.72% EulerIvpOdeSolver::CalculateNextYValue 914ms 6.05% 9.08% 3979ms 26.33% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1766ms 11.69% 20.77% 3680ms 24.35% __GI___exp 2ms 0.013% 20.78% 3399ms 22.50% MonodomainProblem::WriteOneStep 2ms 0.013% 20.79% 3217ms 21.29% H5Dwrite 3ms 0.02% 20.81% 3204ms 21.20% Hdf5DataWriter::PutVector 4ms 0.026% 20.84% 3198ms 21.16% H5D__write 115ms 0.76% 21.60% 2965ms 19.62% AbstractCardiacTissue::UpdateCaches (inline) 834ms 5.52% 27.12% 2781ms 18.41% CellLuoRudy1991FromCellML::GetIIonic 1488ms 9.85% 36.97% 1833ms 12.13% __ieee754_exp_fma 2ms 0.013% 36.98% 1754ms 11.61% H5D__chunk_collective_write 10ms 0.066% 37.05% 1752ms 11.59% H5F_set_coll_metadata_reads 17ms 0.11% 37.16% 1571ms 10.40% H5FD_s3comms_uriencode 3ms 0.02% 37.18% 1524ms 10.09% LinearSystem::Solve 0 0% 37.18% 1431ms 9.47% KSPSolve 2ms 0.013% 37.19% 1431ms 9.47% KSPSolve_Private 1ms 0.0066% 37.20% 1413ms 9.35% KSPSolve_CG 19ms 0.13% 37.33% 1292ms 8.55% H5D__chunk_cacheable 51ms 0.34% 37.66% 1222ms 8.09% 2ms 0.013% 37.68% 1210ms 8.01% H5F_block_write 3ms 0.02% 37.70% 1208ms 7.99% H5PB_write 0 0% 37.70% 1205ms 7.97% H5FD_write 0 0% 37.70% 1205ms 7.97% H5F__accum_write 347ms 2.30% 39.99% 1094ms 7.24% H5S_select_iterate 1ms 0.0066% 40.00% 1093ms 7.23% H5D__mpio_select_write 1ms 0.0066% 40.01% 1016ms 6.72% std::pow (inline) 99ms 0.66% 40.66% 1015ms 6.72% __pow 3ms 0.02% 40.68% 1005ms 6.65% PMPI_File_write_at_all 981ms 6.49% 47.17% 983ms 6.51% __GI_pwritev64 88ms 0.58% 47.76% 915ms 6.06% __ieee754_pow_fma 3ms 0.02% 47.78% 825ms 5.46% PCApply 0 0% 47.78% 822ms 5.44% PCApply_BJacobi_Singleblock 0 0% 47.78% 791ms 5.23% KSPSolve_PREONLY 2ms 0.013% 47.79% 787ms 5.21% MatSolve 0 0% 47.79% 787ms 5.21% PCApply_ICC 779ms 5.16% 52.95% 785ms 5.20% MatSolve_SeqSBAIJ_1_NaturalOrdering 372ms 2.46% 55.41% 773ms 5.12% MonodomainSolver::SetupLinearSystem 80ms 0.53% 55.94% 757ms 5.01% H5D__chunk_set_sizes 0 0% 55.94% 550ms 3.64% KSP_PCApply.lto_priv.7 83ms 0.55% 56.49% 482ms 3.19% H5S_mpio_space_type 1ms 0.0066% 56.49% 480ms 3.18% MatMult 479ms 3.17% 59.66% 479ms 3.17% MatMult_SeqAIJ 202ms 1.34% 61.00% 459ms 3.04% CellLuoRudy1991FromCellML::VerifyStateVariables 454ms 3.00% 64.00% 454ms 3.00% log_inline (inline) 0 0% 64.00% 358ms 2.37% KSPConvergedDefault 308ms 2.04% 66.04% 322ms 2.13% exp_inline (inline) 244ms 1.61% 67.66% 320ms 2.12% top12 (inline) 0 0% 67.66% 279ms 1.85% KSP_PCApply 104ms 0.69% 68.35% 248ms 1.64% TimeStepper::TimeStepper 9ms 0.06% 68.41% 239ms 1.58% H5VM_chunk_index 222ms 1.47% 69.87% 222ms 1.47% [libchaste_heart.so] 0 0% 69.87% 193ms 1.28% Hdf5DataWriter::PutUnlimitedVariable 190ms 1.26% 71.13% 190ms 1.26% ddot_ 46ms 0.3% 71.44% 189ms 1.25% __GI___libc_malloc 29ms 0.19% 71.63% 187ms 1.24% __GI___libc_free 45ms 0.3% 71.93% 182ms 1.20% AbstractCardiacCell::SetVoltage (partial-inline) 14ms 0.093% 72.02% 177ms 1.17% ompi_datatype_destroy 39ms 0.26% 72.28% 175ms 1.16% H5S_set_version 6ms 0.04% 72.32% 173ms 1.14% MPI_Type_free 130ms 0.86% 73.18% 167ms 1.11% _int_malloc 166ms 1.10% 74.28% 166ms 1.10% asuint64 (inline) 57ms 0.38% 74.65% 158ms 1.05% _int_free 151ms 1% 75.65% 151ms 1% TimeStepper::CalculateNextTime 125ms 0.83% 76.48% 147ms 0.97% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 65ms 0.43% 76.91% 145ms 0.96% H5S_hyper_add_span_element 4ms 0.026% 76.94% 142ms 0.94% ompi_info_register_framework_params 29ms 0.19% 77.13% 140ms 0.93% ompi_datatype_release_args 96ms 0.64% 77.76% 137ms 0.91% AbstractOneStepIvpOdeSolver::Solve 37ms 0.24% 78.01% 136ms 0.9% H5VM_array_calc 61ms 0.4% 78.41% 133ms 0.88% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 131ms 0.87% 79.28% 131ms 0.87% __memcpy_avx_unaligned_erms 126ms 0.83% 80.11% 126ms 0.83% H5VM_chunk_index_scaled 8ms 0.053% 80.17% 125ms 0.83% ompi_datatype_create 93ms 0.62% 80.78% 119ms 0.79% AbstractParameterisedSystem::SetAnyVariable 116ms 0.77% 81.55% 116ms 0.77% __ieee754_log_fma 0 0% 81.55% 115ms 0.76% VecNorm 0 0% 81.55% 111ms 0.73% VecNorm_Seq 105ms 0.69% 82.24% 105ms 0.69% H5VM_array_offset_pre 1ms 0.0066% 82.25% 101ms 0.67% PMPI_File_set_view 5ms 0.033% 82.28% 101ms 0.67% PMPI_Type_create_resized 2ms 0.013% 82.30% 101ms 0.67% VecTDot 100ms 0.66% 82.96% 100ms 0.66% std::isinf (inline) 0 0% 82.96% 97ms 0.64% VecTDot_Seq 1ms 0.0066% 82.96% 97ms 0.64% VecXDot_Seq_Private.constprop.0 2ms 0.013% 82.98% 96ms 0.64% H5D__chunk_allocated 1ms 0.0066% 82.98% 94ms 0.62% H5D__select_write 3ms 0.02% 83.00% 93ms 0.62% H5Dgather 55ms 0.36% 83.37% 89ms 0.59% TimeStepper::AdvanceOneTimeStep 1ms 0.0066% 83.38% 88ms 0.58% H5D__contig_fill 88ms 0.58% 83.96% 88ms 0.58% H5VM_array_calc_pre 1ms 0.0066% 83.96% 87ms 0.58% H5VM_opvv 0 0% 83.96% 86ms 0.57% H5D__contig_write 67ms 0.44% 84.41% 85ms 0.56% AbstractParameterisedSystem::GetAnyVariable 2ms 0.013% 84.42% 85ms 0.56% ompi_datatype_duplicate 0 0% 84.42% 84ms 0.56% PMPI_File_write_at 82ms 0.54% 84.96% 82ms 0.54% [libm.so.6] 0 0% 84.96% 82ms 0.54% std::vector::_M_assign_aux (inline) 0 0% 84.96% 82ms 0.54% std::vector::assign (inline) 36ms 0.24% 85.20% 79ms 0.52% AbstractCardiacCell::GetVoltage (partial-inline) 0 0% 85.20% 79ms 0.52% VecDuplicate 0 0% 85.20% 79ms 0.52% VecDuplicate_MPI 25ms 0.17% 85.37% 78ms 0.52% ompi_datatype_set_args 76ms 0.5% 85.87% 76ms 0.5% std::vector::operator[] (inline)