File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109870ms, 91.77% of 119726ms total Dropped 1177 nodes (cum <= 598.63ms) flat flat% sum% cum cum% 0 0% 0% 119710ms 100% __libc_start_call_main 0 0% 0% 119710ms 100% __libc_start_main_impl 0 0% 0% 119710ms 100% _start 0 0% 0% 119707ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119707ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119707ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119707ms 100% main 0 0% 0% 119670ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119670ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119670ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119670ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119670ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 119669ms 100% AbstractConvergenceTester::Converge 1ms 0.00084% 0.00084% 118397ms 98.89% AbstractCardiacProblem::Solve 15ms 0.013% 0.013% 117610ms 98.23% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0042% 0.018% 65833ms 54.99% LinearSystem::Solve 0 0% 0.018% 65300ms 54.54% KSPSolve 16ms 0.013% 0.031% 65300ms 54.54% KSPSolve_Private 17ms 0.014% 0.045% 64870ms 54.18% KSPSolve_SYMMLQ 226ms 0.19% 0.23% 43086ms 35.99% AbstractCardiacTissue::SolveCellSystems 5ms 0.0042% 0.24% 36874ms 30.80% PCApply 0 0% 0.24% 36867ms 30.79% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.24% 34246ms 28.60% KSPSolve_PREONLY (partial-inline) 1454ms 1.21% 1.45% 33230ms 27.76% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 1.46% 33090ms 27.64% PCApply_ICC 7ms 0.0058% 1.46% 33088ms 27.64% MatSolve 32621ms 27.25% 28.71% 33081ms 27.63% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 4ms 0.0033% 28.71% 31924ms 26.66% KSP_PCApply.lto_priv.18 6947ms 5.80% 34.51% 28685ms 23.96% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0058% 34.52% 21969ms 18.35% MatMult 280ms 0.23% 34.75% 21962ms 18.34% MatMult_SeqAIJ (partial-inline) 21464ms 17.93% 52.68% 21959ms 18.34% MatMult_SeqAIJ_Inode (inline) 1941ms 1.62% 54.30% 14569ms 12.17% CardiacNewtonSolver::Solve 276ms 0.23% 54.53% 8971ms 7.49% AbstractCardiacTissue::UpdateCaches (inline) 4399ms 3.67% 58.21% 8585ms 7.17% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1849ms 1.54% 59.75% 8487ms 7.09% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1344ms 1.12% 60.87% 7845ms 6.55% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1086ms 0.91% 61.78% 7719ms 6.45% BidomainSolver::SetupLinearSystem 0 0% 61.78% 7081ms 5.91% KSP_PCApply (partial-inline) 4ms 0.0033% 61.78% 6496ms 5.43% KSPConvergedDefault 6253ms 5.22% 67.01% 6253ms 5.22% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3850ms 3.22% 70.22% 3883ms 3.24% __ieee754_log_fma 0 0% 70.22% 3631ms 3.03% boost::numeric::ublas::norm_inf (inline) 2465ms 2.06% 72.28% 3631ms 3.03% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.28% 3631ms 3.03% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.28% 3631ms 3.03% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 6ms 0.005% 72.29% 3466ms 2.89% MatNullSpaceRemove 3258ms 2.72% 75.01% 3258ms 2.72% __memcpy_avx_unaligned_erms 0 0% 75.01% 3207ms 2.68% PetscMemcpy (inline) 33ms 0.028% 75.04% 3139ms 2.62% std::pow (inline) 391ms 0.33% 75.36% 3097ms 2.59% __pow 1711ms 1.43% 76.79% 2913ms 2.43% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 13ms 0.011% 76.80% 2779ms 2.32% VecCopy 2765ms 2.31% 79.11% 2765ms 2.31% ddot_ 2ms 0.0017% 79.11% 2761ms 2.31% VecCopy_Seq (partial-inline) 349ms 0.29% 79.40% 2695ms 2.25% __ieee754_pow_fma 25ms 0.021% 79.43% 2463ms 2.06% VecAXPY 3ms 0.0025% 79.43% 2438ms 2.04% VecAXPY_Seq 2419ms 2.02% 81.45% 2419ms 2.02% daxpy_ 3ms 0.0025% 81.45% 2251ms 1.88% VecDot 1ms 0.00084% 81.45% 2248ms 1.88% VecDot_Seq 5ms 0.0042% 81.46% 2247ms 1.88% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.46% 2061ms 1.72% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.46% 2016ms 1.68% VecMDot 14ms 0.012% 81.47% 2014ms 1.68% VecMXDot_Private 1991ms 1.66% 83.13% 1993ms 1.66% VecMDot_Seq 35ms 0.029% 83.16% 1690ms 1.41% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1533ms 1.28% 84.44% 1597ms 1.33% exp_inline (inline) 5ms 0.0042% 84.45% 1444ms 1.21% VecMAXPY 1433ms 1.20% 85.64% 1439ms 1.20% VecMAXPY_Seq 1435ms 1.20% 86.84% 1435ms 1.20% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.84% 1414ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1183ms 0.99% 87.83% 1183ms 0.99% __memset_avx2_unaligned_erms 5ms 0.0042% 87.84% 1178ms 0.98% KSP_RemoveNullSpace (inline) 0 0% 87.84% 1169ms 0.98% PetscMemzero (inline) 0 0% 87.84% 1125ms 0.94% CuboidMeshConstructor::Construct 0 0% 87.84% 1124ms 0.94% AbstractTetrahedralMesh::ConstructRegularSlabMesh 3ms 0.0025% 87.84% 1124ms 0.94% DistributedTetrahedralMesh::ConstructCuboid 832ms 0.69% 88.53% 1109ms 0.93% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.0033% 88.54% 1100ms 0.92% boost::numeric::ublas::matrix_assign (inline) 206ms 0.17% 88.71% 1092ms 0.91% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.71% 1078ms 0.9% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.71% 1078ms 0.9% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.71% 1078ms 0.9% boost_numeric_ublas_abs (inline) 1078ms 0.9% 89.61% 1078ms 0.9% std::abs (inline) 3ms 0.0025% 89.61% 1029ms 0.86% Element::Element 1ms 0.00084% 89.61% 1010ms 0.84% VecDuplicate 2ms 0.0017% 89.61% 1006ms 0.84% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00084% 89.61% 948ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 4ms 0.0033% 89.62% 858ms 0.72% BidomainAssembler::ComputeMatrixTerm 10ms 0.0084% 89.63% 856ms 0.71% PetscMallocA 11ms 0.0092% 89.64% 846ms 0.71% PetscMallocAlign (partial-inline) 7ms 0.0058% 89.64% 842ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 840ms 0.7% 90.34% 840ms 0.7% [libchaste_heart.so] 5ms 0.0042% 90.35% 825ms 0.69% VecScale 5ms 0.0042% 90.35% 820ms 0.68% VecScale_Seq 812ms 0.68% 91.03% 812ms 0.68% dscal_ 3ms 0.0025% 91.03% 796ms 0.66% VecNorm 0 0% 91.03% 791ms 0.66% VecNorm_Seq 0 0% 91.03% 728ms 0.61% BidomainProblem::WriteOneStep 691ms 0.58% 91.61% 691ms 0.58% log_inline (inline) 0 0% 91.61% 647ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 1ms 0.00084% 91.61% 644ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 187ms 0.16% 91.77% 642ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.0017% 91.77% 640ms 0.53% VecDuplicate_Seq