File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 352ms, 89.80% of 392ms total Dropped 171 nodes (cum <= 1.96ms) flat flat% sum% cum cum% 0 0% 0% 383ms 97.70% __libc_start_call_main 0 0% 0% 383ms 97.70% __libc_start_main_impl 0 0% 0% 383ms 97.70% _start 0 0% 0% 380ms 96.94% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 380ms 96.94% CxxTest::TestRunner::runAllTests 0 0% 0% 380ms 96.94% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 380ms 96.94% main 0 0% 0% 340ms 86.73% CxxTest::RealTestDescription::run 0 0% 0% 340ms 86.73% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 340ms 86.73% CxxTest::TestRunner::runTest (inline) 0 0% 0% 340ms 86.73% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 340ms 86.73% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 336ms 85.71% AbstractCardiacProblem::Solve 0 0% 0% 336ms 85.71% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 296ms 75.51% LinearSystem::Solve 0 0% 0% 295ms 75.26% KSPSolve 1ms 0.26% 0.26% 295ms 75.26% KSPSolve_Private 0 0% 0.26% 294ms 75.00% KSPSolve_CG 0 0% 0.26% 176ms 44.90% KSP_PCApply.lto_priv.7 0 0% 0.26% 166ms 42.35% PCApply 0 0% 0.26% 165ms 42.09% PCApply_BJacobi_Singleblock 0 0% 0.26% 136ms 34.69% KSPSolve_PREONLY (partial-inline) 1ms 0.26% 0.51% 131ms 33.42% MatSolve 0 0% 0.51% 131ms 33.42% PCApply_ICC 130ms 33.16% 33.67% 130ms 33.16% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 33.67% 63ms 16.07% MatMult 0 0% 33.67% 63ms 16.07% MatMult_SeqAIJ 63ms 16.07% 49.74% 63ms 16.07% MatMult_SeqAIJ_Inode (inline) 40ms 10.20% 59.95% 40ms 10.20% ddot_ 0 0% 59.95% 38ms 9.69% CxxTest::RealWorldDescription::setUp 0 0% 59.95% 38ms 9.69% PMPI_Init_thread 0 0% 59.95% 38ms 9.69% PetscInitialize 0 0% 59.95% 38ms 9.69% PetscSetup::setUpWorld 0 0% 59.95% 38ms 9.69% PetscSetupUtils::CommonSetup 0 0% 59.95% 38ms 9.69% PetscSetupUtils::InitialisePetsc 0 0% 59.95% 38ms 9.69% ompi_mpi_init 2ms 0.51% 60.46% 37ms 9.44% 0 0% 60.46% 32ms 8.16% AbstractCardiacTissue::SolveCellSystems 0 0% 60.46% 27ms 6.89% VecTDot 0 0% 60.46% 27ms 6.89% VecTDot_Seq 0 0% 60.46% 27ms 6.89% VecXDot_Seq_Private.constprop.0 0 0% 60.46% 24ms 6.12% orte_init 0 0% 60.46% 20ms 5.10% AbstractCardiacCell::ComputeExceptVoltage 0 0% 60.46% 19ms 4.85% MatNullSpaceRemove 1ms 0.26% 60.71% 17ms 4.34% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 60.71% 16ms 4.08% hwloc_topology_load 0 0% 60.71% 15ms 3.83% hwloc_linux_get_tid_last_cpu_location 6ms 1.53% 62.24% 14ms 3.57% __GI___exp 0 0% 62.24% 14ms 3.57% __GI__dl_catch_exception 0 0% 62.24% 14ms 3.57% _dl_catch_error 0 0% 62.24% 14ms 3.57% _dlerror_run 1ms 0.26% 62.50% 13ms 3.32% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 62.50% 13ms 3.32% EulerIvpOdeSolver::CalculateNextYValue 0 0% 62.50% 13ms 3.32% VecNorm 0 0% 62.50% 13ms 3.32% VecNorm_Seq 0 0% 62.50% 13ms 3.32% ___dlopen 0 0% 62.50% 13ms 3.32% _dl_init 0 0% 62.50% 13ms 3.32% _dl_open 0 0% 62.50% 13ms 3.32% call_init (inline) 0 0% 62.50% 13ms 3.32% dl_open_worker 0 0% 62.50% 13ms 3.32% dlopen_doit 0 0% 62.50% 13ms 3.32% dlopen_implementation (inline) 0 0% 62.50% 13ms 3.32% mca_base_framework_open 0 0% 62.50% 13ms 3.32% mca_base_framework_register 0 0% 62.50% 13ms 3.32% opal_stackframe_output 0 0% 62.50% 12ms 3.06% mca_base_component_find 0 0% 62.50% 12ms 3.06% mca_base_component_repository_open 0 0% 62.50% 12ms 3.06% mca_base_framework_components_register 0 0% 62.50% 10ms 2.55% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 62.50% 10ms 2.55% VecAYPX 10ms 2.55% 65.05% 10ms 2.55% VecAYPX_Seq 0 0% 65.05% 10ms 2.55% VecMAXPY 9ms 2.30% 67.35% 10ms 2.55% VecMAXPY_Seq 0 0% 67.35% 10ms 2.55% _dl_lookup_symbol_x 2ms 0.51% 67.86% 9ms 2.30% CellLuoRudy1991FromCellML::GetIIonic 0 0% 67.86% 9ms 2.30% VecDuplicate 0 0% 67.86% 9ms 2.30% VecMDot 9ms 2.30% 70.15% 9ms 2.30% VecMDot_Seq 0 0% 70.15% 9ms 2.30% VecMXDot_Private 0 0% 70.15% 9ms 2.30% mca_topo_base_dist_graph_neighbors_count 1ms 0.26% 70.41% 8ms 2.04% VecDuplicate_Seq 6ms 1.53% 71.94% 8ms 2.04% __ieee754_exp_fma 1ms 0.26% 72.19% 8ms 2.04% _dl_runtime_resolve_xsavec 0 0% 72.19% 8ms 2.04% mca_base_framework_components_open 3ms 0.77% 72.96% 7ms 1.79% BidomainSolver::SetupLinearSystem 0 0% 72.96% 7ms 1.79% _dl_fixup 0 0% 72.96% 7ms 1.79% _dl_start_user 0 0% 72.96% 7ms 1.79% dl_open_worker_begin 0 0% 72.96% 6ms 1.53% PetscMemzero (inline) 0 0% 72.96% 6ms 1.53% VecAXPY 1ms 0.26% 73.21% 6ms 1.53% VecAXPY_Seq 6ms 1.53% 74.74% 6ms 1.53% __GI___clock_nanosleep 6ms 1.53% 76.28% 6ms 1.53% __GI___libc_read 0 0% 76.28% 6ms 1.53% __GI___nanosleep 6ms 1.53% 77.81% 6ms 1.53% __memset_avx512_unaligned_erms 0 0% 77.81% 6ms 1.53% opal_hwloc_base_get_topology 0 0% 77.81% 6ms 1.53% orte_ess_base_proc_binding 0 0% 77.81% 6ms 1.53% usleep 0 0% 77.81% 5ms 1.28% VecSet 0 0% 77.81% 5ms 1.28% VecSetType 0 0% 77.81% 5ms 1.28% VecSet_Seq (partial-inline) 5ms 1.28% 79.08% 5ms 1.28% _dl_new_hash (inline) 5ms 1.28% 80.36% 5ms 1.28% daxpy_ 5ms 1.28% 81.63% 5ms 1.28% do_lookup_x 0 0% 81.63% 4ms 1.02% AbstractCardiacProblem::Initialise 0 0% 81.63% 4ms 1.02% KSP_PCApply (inline) 0 0% 81.63% 4ms 1.02% VecCreate_Seq 1ms 0.26% 81.89% 4ms 1.02% VecDestroy 2ms 0.51% 82.40% 4ms 1.02% __GI___libc_malloc 0 0% 82.40% 4ms 1.02% _dl_open_relocate_one_object (inline) 0 0% 82.40% 4ms 1.02% _dl_relocate_object 0 0% 82.40% 3ms 0.77% KSPConvergedReasonViewFromOptions 0 0% 82.40% 3ms 0.77% PetscHeaderDestroy_Private 0 0% 82.40% 3ms 0.77% PetscMallocA 0 0% 82.40% 3ms 0.77% PetscMallocAlign (partial-inline) 2ms 0.51% 82.91% 3ms 0.77% PetscOptionsFindPair 0 0% 82.91% 3ms 0.77% PetscOptionsGetViewer 0 0% 82.91% 3ms 0.77% [hwloc_pci.so] 3ms 0.77% 83.67% 3ms 0.77% [libchaste_heart.so] 2ms 0.51% 84.18% 3ms 0.77% [libpciaccess.so.0.11.1] 0 0% 84.18% 3ms 0.77% __GI_exit 0 0% 84.18% 3ms 0.77% __ieee754_pow_fma 0 0% 84.18% 3ms 0.77% __pow 0 0% 84.18% 3ms 0.77% __run_exit_handlers 1ms 0.26% 84.44% 3ms 0.77% _dl_fini 2ms 0.51% 84.95% 3ms 0.77% _dl_map_object 2ms 0.51% 85.46% 3ms 0.77% boost::serialization::singleton::get_instance 0 0% 85.46% 3ms 0.77% elf_dynamic_do_Rela (inline) 0 0% 85.46% 3ms 0.77% elf_machine_rela (inline) 3ms 0.77% 86.22% 3ms 0.77% exp_inline (inline) 0 0% 86.22% 3ms 0.77% pci_get_strings 0 0% 86.22% 3ms 0.77% resolve_map (inline) 0 0% 86.22% 3ms 0.77% std::pow (inline) 0 0% 86.22% 2ms 0.51% AbstractFeVolumeIntegralAssembler::AssembleOnElement 0 0% 86.22% 2ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 86.22% 2ms 0.51% CxxTest::RealWorldDescription::tearDown 0 0% 86.22% 2ms 0.51% DistributedTetrahedralMesh::ConstructFromMeshReader 2ms 0.51% 86.73% 2ms 0.51% MPI_Comm_size 2ms 0.51% 87.24% 2ms 0.51% MatGetLocalSize 0 0% 87.24% 2ms 0.51% PetscFinalize 0 0% 87.24% 2ms 0.51% PetscHeaderCreate_Private 0 0% 87.24% 2ms 0.51% PetscLogObjDestroyDefault 0 0% 87.24% 2ms 0.51% PetscSetup::tearDownWorld 0 0% 87.24% 2ms 0.51% PetscSetupUtils::CommonFinalize 2ms 0.51% 87.76% 2ms 0.51% PetscStageLogGetCurrent 0 0% 87.76% 2ms 0.51% VecCreate 0 0% 87.76% 2ms 0.51% XOpenDisplay 0 0% 87.76% 2ms 0.51% [hwloc_gl.so] 1ms 0.26% 88.01% 2ms 0.51% [libopen-pal.so.40.30.3] 0 0% 88.01% 2ms 0.51% [libxcb.so.1.1.0] 0 0% 88.01% 2ms 0.51% _XConnectXCB 0 0% 88.01% 2ms 0.51% __cxa_finalize 2ms 0.51% 88.52% 2ms 0.51% __libc_openat64 0 0% 88.52% 2ms 0.51% __posix_memalign 0 0% 88.52% 2ms 0.51% _dl_call_fini 0 0% 88.52% 2ms 0.51% _dl_map_object_deps 1ms 0.26% 88.78% 2ms 0.51% _int_malloc 0 0% 88.78% 2ms 0.51% boost::numeric::ublas::c_matrix::c_matrix (inline) 0 0% 88.78% 2ms 0.51% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 88.78% 2ms 0.51% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 88.78% 2ms 0.51% boost::serialization::singleton::get_mutable_instance (inline) 2ms 0.51% 89.29% 2ms 0.51% boost::serialization::void_cast_detail::void_caster::recursive_unregister 0 0% 89.29% 2ms 0.51% boost::serialization::void_cast_detail::void_caster_primitive::~void_caster_primitive (inline) 0 0% 89.29% 2ms 0.51% clone3 0 0% 89.29% 2ms 0.51% event_base_loop 0 0% 89.29% 2ms 0.51% event_del_nolock_ 0 0% 89.29% 2ms 0.51% ompi_mpi_finalize 0 0% 89.29% 2ms 0.51% openaux 0 0% 89.29% 2ms 0.51% operator new 0 0% 89.29% 2ms 0.51% start_thread 0 0% 89.29% 2ms 0.51% std::vector::_M_assign_aux (inline) 0 0% 89.29% 2ms 0.51% std::vector::assign (inline) 2ms 0.51% 89.80% 2ms 0.51% top12 (inline) 0 0% 89.80% 2ms 0.51% udev_enumerate_scan_devices 0 0% 89.80% 2ms 0.51% xcb_connect_to_display_with_auth_info