File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3633ms, 87.04% of 4174ms total Dropped 439 nodes (cum <= 20.87ms) flat flat% sum% cum cum% 0 0% 0% 4166ms 99.81% __libc_start_call_main 0 0% 0% 4166ms 99.81% __libc_start_main_impl 0 0% 0% 4166ms 99.81% _start 0 0% 0% 4163ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4163ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4163ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4163ms 99.74% main 0 0% 0% 4127ms 98.87% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4127ms 98.87% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4127ms 98.87% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4119ms 98.68% AbstractCardiacProblem::Solve 1ms 0.024% 0.048% 4103ms 98.30% AbstractDynamicLinearPdeSolver::Solve 10ms 0.24% 0.29% 2381ms 57.04% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.31% 1420ms 34.02% LinearSystem::Solve 39ms 0.93% 1.25% 1387ms 33.23% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.25% 1375ms 32.94% KSPSolve 8ms 0.19% 1.44% 1375ms 32.94% KSPSolve_Private 0 0% 1.44% 1330ms 31.86% KSPSolve_SYMMLQ 30ms 0.72% 2.16% 1197ms 28.68% AbstractOneStepIvpOdeSolver::InternalSolve 65ms 1.56% 3.71% 1005ms 24.08% EulerIvpOdeSolver::CalculateNextYValue 289ms 6.92% 10.64% 929ms 22.26% CellLuoRudy1991FromCellML::EvaluateYDerivatives 361ms 8.65% 19.29% 825ms 19.77% __GI___exp 3ms 0.072% 19.36% 803ms 19.24% PCApply 26ms 0.62% 19.98% 797ms 19.09% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.024% 20.00% 793ms 19.00% PCApply_BJacobi_Singleblock 258ms 6.18% 26.19% 745ms 17.85% CellLuoRudy1991FromCellML::GetIIonic 0 0% 26.19% 680ms 16.29% KSPSolve_PREONLY (partial-inline) 3ms 0.072% 26.26% 643ms 15.40% MatSolve 0 0% 26.26% 643ms 15.40% PCApply_ICC 629ms 15.07% 41.33% 638ms 15.29% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 41.33% 589ms 14.11% KSP_PCApply.lto_priv.18 412ms 9.87% 51.20% 443ms 10.61% __ieee754_exp_fma 7ms 0.17% 51.37% 427ms 10.23% MatMult 6ms 0.14% 51.51% 415ms 9.94% MatMult_SeqAIJ (partial-inline) 406ms 9.73% 61.24% 415ms 9.94% MatMult_SeqAIJ_Inode (inline) 0 0% 61.24% 289ms 6.92% KSPConvergedDefault 0 0% 61.24% 277ms 6.64% KSP_PCApply (partial-inline) 51ms 1.22% 62.46% 272ms 6.52% BidomainSolver::SetupLinearSystem 3ms 0.072% 62.53% 236ms 5.65% std::pow (inline) 25ms 0.6% 63.13% 233ms 5.58% __pow 23ms 0.55% 63.68% 208ms 4.98% __ieee754_pow_fma 72ms 1.72% 65.40% 159ms 3.81% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 65.43% 103ms 2.47% MatNullSpaceRemove 97ms 2.32% 67.75% 97ms 2.32% log_inline (inline) 2ms 0.048% 67.80% 85ms 2.04% VecDuplicate 80ms 1.92% 69.72% 80ms 1.92% exp_inline (inline) 37ms 0.89% 70.60% 76ms 1.82% TimeStepper::TimeStepper 16ms 0.38% 70.99% 72ms 1.72% MPI_Wtime 61ms 1.46% 72.45% 61ms 1.46% ddot_ 2ms 0.048% 72.50% 56ms 1.34% __GI___clock_gettime 0 0% 72.50% 54ms 1.29% VecMDot 1ms 0.024% 72.52% 54ms 1.29% VecMXDot_Private 54ms 1.29% 73.81% 54ms 1.29% [[vdso]] 13ms 0.31% 74.13% 51ms 1.22% PetscLogEventEndDefault 6ms 0.14% 74.27% 51ms 1.22% VecCopy 8ms 0.19% 74.46% 49ms 1.17% PetscLogEventBeginDefault 3ms 0.072% 74.53% 49ms 1.17% VecDuplicate_MPI 48ms 1.15% 75.68% 49ms 1.17% __ieee754_log_fma 4ms 0.096% 75.78% 48ms 1.15% VecMAXPY 37ms 0.89% 76.67% 46ms 1.10% AbstractOneStepIvpOdeSolver::Solve 6ms 0.14% 76.81% 45ms 1.08% VecAXPY 0 0% 76.81% 45ms 1.08% VecDot 45ms 1.08% 77.89% 45ms 1.08% __memcpy_avx_unaligned_erms 44ms 1.05% 78.94% 44ms 1.05% TimeStepper::CalculateNextTime 44ms 1.05% 80.00% 44ms 1.05% std::isinf (inline) 0 0% 80.00% 41ms 0.98% VecDot_Seq 0 0% 80.00% 41ms 0.98% VecNorm 0 0% 80.00% 41ms 0.98% VecXDot_Seq_Private.constprop.0 1ms 0.024% 80.02% 39ms 0.93% VecDestroy 0 0% 80.02% 38ms 0.91% PetscMemcpy (inline) 18ms 0.43% 80.45% 37ms 0.89% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 4ms 0.096% 80.55% 37ms 0.89% PetscMallocA 0 0% 80.55% 36ms 0.86% VecCreate 1ms 0.024% 80.57% 35ms 0.84% VecNorm_Seq 11ms 0.26% 80.83% 35ms 0.84% top12 (inline) 1ms 0.024% 80.86% 34ms 0.81% VecDuplicate_Seq 8ms 0.19% 81.05% 33ms 0.79% AbstractCardiacCell::SetVoltage (partial-inline) 29ms 0.69% 81.74% 33ms 0.79% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 81.74% 33ms 0.79% CxxTest::RealWorldDescription::setUp 0 0% 81.74% 33ms 0.79% PMPI_Init_thread 0 0% 81.74% 33ms 0.79% PetscInitialize 3ms 0.072% 81.82% 33ms 0.79% PetscMallocAlign 0 0% 81.82% 33ms 0.79% PetscSetup::setUpWorld 0 0% 81.82% 33ms 0.79% PetscSetupUtils::CommonSetup 0 0% 81.82% 33ms 0.79% PetscSetupUtils::InitialisePetsc 0 0% 81.82% 33ms 0.79% ompi_mpi_init 30ms 0.72% 82.53% 32ms 0.77% VecMDot_Seq 1ms 0.024% 82.56% 29ms 0.69% VecAXPY_Seq 2ms 0.048% 82.61% 29ms 0.69% VecCreate_MPI_Private 29ms 0.69% 83.30% 29ms 0.69% asuint64 (inline) 25ms 0.6% 83.90% 27ms 0.65% VecMAXPY_Seq 27ms 0.65% 84.55% 27ms 0.65% [libchaste_heart.so] 1ms 0.024% 84.57% 26ms 0.62% 18ms 0.43% 85.00% 26ms 0.62% AbstractCardiacCell::GetVoltage (partial-inline) 11ms 0.26% 85.27% 26ms 0.62% TimeStepper::AdvanceOneTimeStep 26ms 0.62% 85.89% 26ms 0.62% daxpy_ 11ms 0.26% 86.15% 24ms 0.57% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 86.15% 24ms 0.57% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 86.15% 24ms 0.57% VecCopy_Seq (partial-inline) 0 0% 86.15% 24ms 0.57% orte_init 9ms 0.22% 86.37% 23ms 0.55% std::__cxx11::basic_string::basic_string 4ms 0.096% 86.46% 22ms 0.53% __posix_memalign 0 0% 86.46% 21ms 0.5% AbstractFeVolumeIntegralAssembler::DoAssemble 21ms 0.5% 86.97% 21ms 0.5% [libm.so.6] 3ms 0.072% 87.04% 21ms 0.5% std::vector::_M_assign_aux (inline) 0 0% 87.04% 21ms 0.5% std::vector::assign (inline)