File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109389ms, 91.96% of 118950ms total Dropped 1125 nodes (cum <= 594.75ms) flat flat% sum% cum cum% 0 0% 0% 118936ms 100% __libc_start_call_main 0 0% 0% 118936ms 100% __libc_start_main_impl 0 0% 0% 118936ms 100% _start 0 0% 0% 118933ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118933ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118933ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118933ms 100% main 0 0% 0% 118897ms 100% AbstractConvergenceTester::Converge 0 0% 0% 118897ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118897ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118897ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118897ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118897ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0025% 0.0025% 117667ms 98.92% AbstractCardiacProblem::Solve 5ms 0.0042% 0.0067% 116944ms 98.31% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0059% 0.013% 65570ms 55.12% LinearSystem::Solve 1ms 0.00084% 0.013% 65065ms 54.70% KSPSolve 9ms 0.0076% 0.021% 65065ms 54.70% KSPSolve_Private 10ms 0.0084% 0.029% 64681ms 54.38% KSPSolve_SYMMLQ 211ms 0.18% 0.21% 42544ms 35.77% AbstractCardiacTissue::SolveCellSystems 5ms 0.0042% 0.21% 36474ms 30.66% PCApply 3ms 0.0025% 0.21% 36461ms 30.65% PCApply_BJacobi_Singleblock 1ms 0.00084% 0.21% 34022ms 28.60% KSPSolve_PREONLY (partial-inline) 1ms 0.00084% 0.22% 32842ms 27.61% PCApply_ICC 7ms 0.0059% 0.22% 32841ms 27.61% MatSolve 32384ms 27.22% 27.45% 32834ms 27.60% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1429ms 1.20% 28.65% 32562ms 27.37% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 6ms 0.005% 28.65% 31491ms 26.47% KSP_PCApply.lto_priv.18 6834ms 5.75% 34.40% 28096ms 23.62% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 10ms 0.0084% 34.41% 22346ms 18.79% MatMult 394ms 0.33% 34.74% 22336ms 18.78% MatMult_SeqAIJ (partial-inline) 21706ms 18.25% 52.99% 22208ms 18.67% MatMult_SeqAIJ_Inode (inline) 1932ms 1.62% 54.61% 14573ms 12.25% CardiacNewtonSolver::Solve 323ms 0.27% 54.88% 9139ms 7.68% AbstractCardiacTissue::UpdateCaches (inline) 2053ms 1.73% 56.61% 8635ms 7.26% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 4463ms 3.75% 60.36% 8524ms 7.17% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1092ms 0.92% 61.28% 7787ms 6.55% BidomainSolver::SetupLinearSystem 1081ms 0.91% 62.19% 7180ms 6.04% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 2ms 0.0017% 62.19% 7051ms 5.93% KSP_PCApply (partial-inline) 6ms 0.005% 62.19% 6418ms 5.40% KSPConvergedDefault 5822ms 4.89% 67.09% 5822ms 4.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3761ms 3.16% 70.25% 3796ms 3.19% __ieee754_log_fma 0 0% 70.25% 3681ms 3.09% boost::numeric::ublas::norm_inf (inline) 2479ms 2.08% 72.33% 3681ms 3.09% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.33% 3681ms 3.09% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.33% 3681ms 3.09% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0059% 72.34% 3362ms 2.83% MatNullSpaceRemove 26ms 0.022% 72.36% 3275ms 2.75% std::pow (inline) 392ms 0.33% 72.69% 3242ms 2.73% __pow 3198ms 2.69% 75.38% 3198ms 2.69% __memcpy_avx_unaligned_erms 0 0% 75.38% 3165ms 2.66% PetscMemcpy (inline) 1710ms 1.44% 76.82% 2866ms 2.41% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 399ms 0.34% 77.15% 2838ms 2.39% __ieee754_pow_fma 19ms 0.016% 77.17% 2742ms 2.31% VecCopy 2730ms 2.30% 79.46% 2730ms 2.30% ddot_ 2ms 0.0017% 79.46% 2720ms 2.29% VecCopy_Seq (partial-inline) 13ms 0.011% 79.48% 2426ms 2.04% VecAXPY 4ms 0.0034% 79.48% 2413ms 2.03% VecAXPY_Seq 2399ms 2.02% 81.50% 2399ms 2.02% daxpy_ 3ms 0.0025% 81.50% 2226ms 1.87% VecDot 0 0% 81.50% 2223ms 1.87% VecDot_Seq 1ms 0.00084% 81.50% 2223ms 1.87% VecXDot_Seq_Private.constprop.0 7ms 0.0059% 81.50% 2079ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.51% 1914ms 1.61% VecMDot 19ms 0.016% 81.52% 1912ms 1.61% VecMXDot_Private 1888ms 1.59% 83.11% 1892ms 1.59% VecMDot_Seq 29ms 0.024% 83.13% 1708ms 1.44% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1618ms 1.36% 84.49% 1663ms 1.40% exp_inline (inline) 1500ms 1.26% 85.76% 1500ms 1.26% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 8ms 0.0067% 85.76% 1441ms 1.21% VecMAXPY 0 0% 85.76% 1433ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1428ms 1.20% 86.96% 1433ms 1.20% VecMAXPY_Seq 6ms 0.005% 86.97% 1114ms 0.94% boost::numeric::ublas::matrix_assign (inline) 211ms 0.18% 87.15% 1103ms 0.93% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.15% 1103ms 0.93% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.15% 1103ms 0.93% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.15% 1103ms 0.93% boost_numeric_ublas_abs (inline) 1103ms 0.93% 88.07% 1103ms 0.93% std::abs (inline) 0 0% 88.07% 1086ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.07% 1086ms 0.91% CuboidMeshConstructor::Construct 4ms 0.0034% 88.08% 1086ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 5ms 0.0042% 88.08% 1079ms 0.91% KSP_RemoveNullSpace (inline) 1074ms 0.9% 88.98% 1074ms 0.9% __memset_avx2_unaligned_erms 0 0% 88.98% 1067ms 0.9% PetscMemzero (inline) 818ms 0.69% 89.67% 1064ms 0.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 6ms 0.005% 89.68% 961ms 0.81% Element::Element 3ms 0.0025% 89.68% 929ms 0.78% AbstractTetrahedralElement::CalculateJacobian 4ms 0.0034% 89.68% 915ms 0.77% VecDuplicate 0 0% 89.68% 889ms 0.75% AbstractTetrahedralElement::AbstractTetrahedralElement 4ms 0.0034% 89.68% 871ms 0.73% BidomainAssembler::ComputeMatrixTerm 7ms 0.0059% 89.69% 863ms 0.73% VecScale 4ms 0.0034% 89.69% 856ms 0.72% VecScale_Seq 851ms 0.72% 90.41% 851ms 0.72% dscal_ 3ms 0.0025% 90.41% 849ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 845ms 0.71% 91.12% 845ms 0.71% [libchaste_heart.so] 15ms 0.013% 91.13% 760ms 0.64% PetscMallocA 8ms 0.0067% 91.14% 745ms 0.63% PetscMallocAlign (partial-inline) 1ms 0.00084% 91.14% 743ms 0.62% VecNorm 2ms 0.0017% 91.14% 740ms 0.62% AbstractBidomainSolver::FinaliseLinearSystem 739ms 0.62% 91.77% 739ms 0.62% log_inline (inline) 1ms 0.00084% 91.77% 737ms 0.62% VecNorm_Seq 233ms 0.2% 91.96% 734ms 0.62% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.96% 679ms 0.57% BidomainProblem::WriteOneStep 0 0% 91.96% 646ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)