File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 327ms, 88.38% of 370ms total Dropped 146 nodes (cum <= 1.85ms) flat flat% sum% cum cum% 0 0% 0% 362ms 97.84% __libc_start_call_main 0 0% 0% 362ms 97.84% __libc_start_main_impl 0 0% 0% 362ms 97.84% _start 0 0% 0% 359ms 97.03% CxxTest::TestRunner::runAllTests 0 0% 0% 359ms 97.03% main 0 0% 0% 331ms 89.46% CxxTest::RealTestDescription::run 0 0% 0% 331ms 89.46% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 326ms 88.11% AbstractCardiacProblem::Solve 0 0% 0% 324ms 87.57% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 297ms 80.27% LinearSystem::Solve 0 0% 0% 296ms 80.00% KSPSolve 1ms 0.27% 0.27% 296ms 80.00% KSPSolve_Private 0 0% 0.27% 295ms 79.73% KSPSolve_CG 0 0% 0.27% 189ms 51.08% KSP_PCApply.lto_priv.7 1ms 0.27% 0.54% 183ms 49.46% PCApply 0 0% 0.54% 182ms 49.19% PCApply_BJacobi_Singleblock 0 0% 0.54% 148ms 40.00% KSPSolve_PREONLY (partial-inline) 0 0% 0.54% 140ms 37.84% MatSolve 140ms 37.84% 38.38% 140ms 37.84% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 38.38% 140ms 37.84% PCApply_ICC 0 0% 38.38% 55ms 14.86% MatMult 5ms 1.35% 39.73% 55ms 14.86% MatMult_SeqAIJ (partial-inline) 50ms 13.51% 53.24% 55ms 14.86% MatMult_SeqAIJ_Inode (inline) 32ms 8.65% 61.89% 32ms 8.65% ddot_ 0 0% 61.89% 25ms 6.76% CxxTest::RealWorldDescription::setUp 0 0% 61.89% 25ms 6.76% PetscInitialize 0 0% 61.89% 25ms 6.76% PetscSetup::setUpWorld 0 0% 61.89% 25ms 6.76% PetscSetupUtils::CommonSetup 0 0% 61.89% 25ms 6.76% PetscSetupUtils::InitialisePetsc 0 0% 61.89% 24ms 6.49% AbstractCardiacTissue::SolveCellSystems 0 0% 61.89% 24ms 6.49% PMPI_Init_thread 0 0% 61.89% 24ms 6.49% ompi_mpi_init 3ms 0.81% 62.70% 23ms 6.22% 0 0% 62.70% 23ms 6.22% MatNullSpaceRemove 0 0% 62.70% 19ms 5.14% VecTDot 0 0% 62.70% 19ms 5.14% VecTDot_Seq 0 0% 62.70% 19ms 5.14% VecXDot_Seq_Private.constprop.0 0 0% 62.70% 17ms 4.59% orte_init 0 0% 62.70% 15ms 4.05% AbstractCardiacCell::ComputeExceptVoltage 0 0% 62.70% 15ms 4.05% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 62.70% 14ms 3.78% VecDuplicate 0 0% 62.70% 14ms 3.78% VecNorm 0 0% 62.70% 14ms 3.78% VecNorm_Seq 1ms 0.27% 62.97% 13ms 3.51% EulerIvpOdeSolver::CalculateNextYValue 0 0% 62.97% 13ms 3.51% VecDuplicate_Seq 0 0% 62.97% 13ms 3.51% VecMDot 13ms 3.51% 66.49% 13ms 3.51% VecMDot_Seq 0 0% 66.49% 13ms 3.51% VecMXDot_Private 4ms 1.08% 67.57% 12ms 3.24% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 67.57% 12ms 3.24% VecAYPX 11ms 2.97% 70.54% 12ms 3.24% VecAYPX_Seq 0 0% 70.54% 11ms 2.97% __GI__dl_catch_exception 0 0% 70.54% 11ms 2.97% _dl_catch_error 0 0% 70.54% 11ms 2.97% _dlerror_run 1ms 0.27% 70.81% 10ms 2.70% VecCreate 0 0% 70.81% 10ms 2.70% VecMAXPY 10ms 2.70% 73.51% 10ms 2.70% VecMAXPY_Seq 0 0% 73.51% 10ms 2.70% _dl_init 0 0% 73.51% 10ms 2.70% call_init (inline) 0 0% 73.51% 10ms 2.70% mca_base_framework_open 0 0% 73.51% 10ms 2.70% opal_stackframe_output 4ms 1.08% 74.59% 9ms 2.43% __GI___exp 0 0% 74.59% 9ms 2.43% hwloc_topology_load 0 0% 74.59% 9ms 2.43% mca_base_framework_register 0 0% 74.59% 8ms 2.16% KSP_PCApply (inline) 0 0% 74.59% 8ms 2.16% ___dlopen 0 0% 74.59% 8ms 2.16% _dl_open 0 0% 74.59% 8ms 2.16% dl_open_worker 0 0% 74.59% 8ms 2.16% dlopen_doit 0 0% 74.59% 8ms 2.16% dlopen_implementation (inline) 0 0% 74.59% 8ms 2.16% hwloc_linux_get_tid_last_cpu_location 0 0% 74.59% 8ms 2.16% mca_base_framework_components_register 0 0% 74.59% 7ms 1.89% PetscMallocA 0 0% 74.59% 7ms 1.89% PetscMallocAlign 0 0% 74.59% 7ms 1.89% VecAXPY 0 0% 74.59% 7ms 1.89% VecAXPY_Seq 1ms 0.27% 74.86% 7ms 1.89% __posix_memalign 0 0% 74.86% 7ms 1.89% _dl_start_user 7ms 1.89% 76.76% 7ms 1.89% daxpy_ 0 0% 76.76% 7ms 1.89% mca_base_component_find 0 0% 76.76% 7ms 1.89% mca_base_component_repository_open 0 0% 76.76% 6ms 1.62% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.81% 77.57% 6ms 1.62% __GI___libc_malloc 1ms 0.27% 77.84% 5ms 1.35% boost::serialization::singleton::get_instance 0 0% 77.84% 5ms 1.35% dl_open_worker_begin 0 0% 77.84% 4ms 1.08% AbstractCardiacProblem::Initialise 0 0% 77.84% 4ms 1.08% PetscMemcpy (inline) 0 0% 77.84% 4ms 1.08% VecCreate_Seq 1ms 0.27% 78.11% 4ms 1.08% VecDestroy 0 0% 78.11% 4ms 1.08% VecSetType 4ms 1.08% 79.19% 4ms 1.08% __ieee754_exp_fma 0 0% 79.19% 4ms 1.08% __ieee754_pow_fma 0 0% 79.19% 4ms 1.08% __pow 0 0% 79.19% 4ms 1.08% _dl_fixup 0 0% 79.19% 4ms 1.08% _dl_runtime_resolve_xsavec 2ms 0.54% 79.73% 4ms 1.08% _int_malloc 0 0% 79.73% 4ms 1.08% mca_base_framework_components_open 0 0% 79.73% 3ms 0.81% BidomainSolver::SetupLinearSystem 0 0% 79.73% 3ms 0.81% CxxTest::RealWorldDescription::tearDown 0 0% 79.73% 3ms 0.81% DistributedTetrahedralMesh::ConstructFromMeshReader 0 0% 79.73% 3ms 0.81% PMPI_Comm_get_attr 0 0% 79.73% 3ms 0.81% PetscFinalize 0 0% 79.73% 3ms 0.81% PetscHeaderCreate_Private 0 0% 79.73% 3ms 0.81% PetscMemzero (inline) 0 0% 79.73% 3ms 0.81% PetscSetup::tearDownWorld 0 0% 79.73% 3ms 0.81% PetscSetupUtils::CommonFinalize 0 0% 79.73% 3ms 0.81% VecCopy 0 0% 79.73% 3ms 0.81% VecCopy_Seq (partial-inline) 0 0% 79.73% 3ms 0.81% VecSet 0 0% 79.73% 3ms 0.81% VecSet_Seq (partial-inline) 3ms 0.81% 80.54% 3ms 0.81% __GI___libc_read 0 0% 80.54% 3ms 0.81% __GI_exit 1ms 0.27% 80.81% 3ms 0.81% __cxa_finalize 0 0% 80.81% 3ms 0.81% __dlclose 3ms 0.81% 81.62% 3ms 0.81% __libc_openat64 3ms 0.81% 82.43% 3ms 0.81% __memcpy_evex_unaligned_erms 3ms 0.81% 83.24% 3ms 0.81% __memset_evex_unaligned_erms 0 0% 83.24% 3ms 0.81% __run_exit_handlers 0 0% 83.24% 3ms 0.81% _dl_call_fini 0 0% 83.24% 3ms 0.81% _dl_close 1ms 0.27% 83.51% 3ms 0.81% _dl_close_worker (inline) 0 0% 83.51% 3ms 0.81% _dl_fini 0 0% 83.51% 3ms 0.81% _dl_lookup_symbol_x 3ms 0.81% 84.32% 3ms 0.81% log_inline (inline) 0 0% 84.32% 3ms 0.81% mca_topo_base_dist_graph_neighbors_count 0 0% 84.32% 3ms 0.81% ompi_attr_get_c 0 0% 84.32% 3ms 0.81% ompi_mpi_finalize 0 0% 84.32% 3ms 0.81% opal_hwloc_base_get_topology 0 0% 84.32% 3ms 0.81% orte_ess_base_proc_binding 3ms 0.81% 85.14% 3ms 0.81% std::_Rb_tree_increment 0 0% 85.14% 2ms 0.54% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 85.14% 2ms 0.54% KSPSetUp 0 0% 85.14% 2ms 0.54% PetscHeaderDestroy_Private 2ms 0.54% 85.68% 2ms 0.54% VecCreate_Seq_Private (partial-inline) 2ms 0.54% 86.22% 2ms 0.54% [libchaste_heart.so] 0 0% 86.22% 2ms 0.54% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 2ms 0.54% 86.76% 2ms 0.54% __GI___clock_nanosleep 0 0% 86.76% 2ms 0.54% __GI___nanosleep 2ms 0.54% 87.30% 2ms 0.54% __strcmp_evex 0 0% 87.30% 2ms 0.54% _dl_map_object 2ms 0.54% 87.84% 2ms 0.54% _dl_new_hash (inline) 0 0% 87.84% 2ms 0.54% _dl_open_relocate_one_object (inline) 0 0% 87.84% 2ms 0.54% _dl_relocate_object 0 0% 87.84% 2ms 0.54% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 87.84% 2ms 0.54% boost::serialization::void_cast_detail::void_caster::recursive_register 2ms 0.54% 88.38% 2ms 0.54% malloc_consolidate 0 0% 88.38% 2ms 0.54% mca_base_component_repository_release 0 0% 88.38% 2ms 0.54% mca_base_components_close 0 0% 88.38% 2ms 0.54% mca_base_framework_close 0 0% 88.38% 2ms 0.54% usleep