File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3641ms, 85.69% of 4249ms total Dropped 459 nodes (cum <= 21.25ms) flat flat% sum% cum cum% 0 0% 0% 4241ms 99.81% __libc_start_call_main 0 0% 0% 4241ms 99.81% __libc_start_main_impl 0 0% 0% 4241ms 99.81% _start 0 0% 0% 4238ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4238ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4238ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4238ms 99.74% main 0 0% 0% 4199ms 98.82% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4199ms 98.82% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4199ms 98.82% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4194ms 98.71% AbstractCardiacProblem::Solve 0 0% 0.024% 4178ms 98.33% AbstractDynamicLinearPdeSolver::Solve 11ms 0.26% 0.28% 2232ms 52.53% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 0.33% 1640ms 38.60% LinearSystem::Solve 0 0% 0.33% 1586ms 37.33% KSPSolve 8ms 0.19% 0.52% 1586ms 37.33% KSPSolve_Private 4ms 0.094% 0.61% 1523ms 35.84% KSPSolve_SYMMLQ 21ms 0.49% 1.11% 1271ms 29.91% AbstractCardiacCell::ComputeExceptVoltage 15ms 0.35% 1.46% 1081ms 25.44% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.024% 1.48% 981ms 23.09% PCApply 1ms 0.024% 1.51% 968ms 22.78% PCApply_BJacobi_Singleblock 51ms 1.20% 2.71% 928ms 21.84% EulerIvpOdeSolver::CalculateNextYValue 220ms 5.18% 7.88% 864ms 20.33% CellLuoRudy1991FromCellML::EvaluateYDerivatives 396ms 9.32% 17.20% 823ms 19.37% __GI___exp 0 0% 17.20% 821ms 19.32% KSPSolve_PREONLY (partial-inline) 2ms 0.047% 17.25% 772ms 18.17% MatSolve 0 0% 17.25% 772ms 18.17% PCApply_ICC 760ms 17.89% 35.14% 764ms 17.98% MatSolve_SeqSBAIJ_1_NaturalOrdering 21ms 0.49% 35.63% 747ms 17.58% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 35.63% 730ms 17.18% KSP_PCApply.lto_priv.18 246ms 5.79% 41.42% 688ms 16.19% CellLuoRudy1991FromCellML::GetIIonic 5ms 0.12% 41.54% 424ms 9.98% MatMult 5ms 0.12% 41.66% 413ms 9.72% MatMult_SeqAIJ (partial-inline) 405ms 9.53% 51.19% 413ms 9.72% MatMult_SeqAIJ_Inode (inline) 387ms 9.11% 60.30% 409ms 9.63% __ieee754_exp_fma 1ms 0.024% 60.32% 339ms 7.98% KSPConvergedDefault 0 0% 60.32% 328ms 7.72% KSP_PCApply (partial-inline) 46ms 1.08% 61.40% 257ms 6.05% BidomainSolver::SetupLinearSystem 2ms 0.047% 61.45% 216ms 5.08% std::pow (inline) 30ms 0.71% 62.16% 214ms 5.04% __pow 19ms 0.45% 62.60% 183ms 4.31% __ieee754_pow_fma 78ms 1.84% 64.44% 162ms 3.81% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 64.46% 130ms 3.06% MatNullSpaceRemove 0 0% 64.46% 109ms 2.57% VecDuplicate 20ms 0.47% 64.93% 94ms 2.21% MPI_Wtime 0 0% 64.93% 85ms 2.00% VecMDot 6ms 0.14% 65.07% 85ms 2.00% VecMXDot_Private 78ms 1.84% 66.91% 79ms 1.86% exp_inline (inline) 6ms 0.14% 67.05% 75ms 1.77% VecCopy 3ms 0.071% 67.12% 74ms 1.74% __GI___clock_gettime 17ms 0.4% 67.52% 73ms 1.72% PetscLogEventBeginDefault 39ms 0.92% 68.44% 73ms 1.72% TimeStepper::TimeStepper 71ms 1.67% 70.11% 71ms 1.67% [[vdso]] 71ms 1.67% 71.78% 71ms 1.67% log_inline (inline) 15ms 0.35% 72.13% 69ms 1.62% PetscLogEventEndDefault 4ms 0.094% 72.23% 62ms 1.46% VecDuplicate_MPI 60ms 1.41% 73.64% 60ms 1.41% ddot_ 53ms 1.25% 74.89% 56ms 1.32% VecMDot_Seq 2ms 0.047% 74.94% 55ms 1.29% VecDot 32ms 0.75% 75.69% 54ms 1.27% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 11ms 0.26% 75.95% 49ms 1.15% AbstractCardiacCell::SetVoltage (partial-inline) 2ms 0.047% 75.99% 48ms 1.13% VecDestroy 0 0% 75.99% 48ms 1.13% VecDot_Seq 1ms 0.024% 76.02% 48ms 1.13% VecXDot_Seq_Private.constprop.0 0 0% 76.02% 47ms 1.11% VecDuplicate_Seq 14ms 0.33% 76.35% 44ms 1.04% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 76.35% 44ms 1.04% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.024% 76.37% 44ms 1.04% VecMAXPY 0 0% 76.37% 43ms 1.01% PetscMemcpy (inline) 0 0% 76.37% 43ms 1.01% PetscTimeAdd (inline) 43ms 1.01% 77.38% 43ms 1.01% __memcpy_avx_unaligned_erms 5ms 0.12% 77.50% 42ms 0.99% PetscMallocA 0 0% 77.50% 42ms 0.99% VecNorm 41ms 0.96% 78.47% 41ms 0.96% std::isinf (inline) 3ms 0.071% 78.54% 40ms 0.94% VecCreate 2ms 0.047% 78.58% 40ms 0.94% VecCreate_MPI_Private 33ms 0.78% 79.36% 39ms 0.92% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 39ms 0.92% 80.28% 39ms 0.92% TimeStepper::CalculateNextTime 1ms 0.024% 80.30% 37ms 0.87% PetscMallocAlign (partial-inline) 26ms 0.61% 80.91% 36ms 0.85% AbstractOneStepIvpOdeSolver::Solve 24ms 0.56% 81.48% 35ms 0.82% top12 (inline) 0 0% 81.48% 34ms 0.8% CxxTest::RealWorldDescription::setUp 0 0% 81.48% 34ms 0.8% PetscInitialize 0 0% 81.48% 34ms 0.8% PetscSetup::setUpWorld 0 0% 81.48% 34ms 0.8% PetscSetupUtils::CommonSetup 0 0% 81.48% 34ms 0.8% PetscSetupUtils::InitialisePetsc 0 0% 81.48% 33ms 0.78% PMPI_Init_thread 33ms 0.78% 82.25% 33ms 0.78% [libchaste_heart.so] 0 0% 82.25% 33ms 0.78% ompi_mpi_init 1ms 0.024% 82.28% 32ms 0.75% VecAXPY 1ms 0.024% 82.30% 32ms 0.75% VecCopy_Seq (partial-inline) 27ms 0.64% 82.94% 29ms 0.68% AbstractParameterisedSystem::SetAnyVariable 27ms 0.64% 83.57% 28ms 0.66% __ieee754_log_fma 11ms 0.26% 83.83% 28ms 0.66% std::__cxx11::basic_string::basic_string 2ms 0.047% 83.88% 27ms 0.64% 17ms 0.4% 84.28% 27ms 0.64% AbstractCardiacCell::GetVoltage (partial-inline) 27ms 0.64% 84.91% 27ms 0.64% VecMAXPY_Seq 0 0% 84.91% 26ms 0.61% PetscMemzero (inline) 0 0% 84.91% 26ms 0.61% VecNorm_Seq 3ms 0.071% 84.98% 25ms 0.59% VecSetType 25ms 0.59% 85.57% 25ms 0.59% __memset_avx2_unaligned_erms 0 0% 85.57% 23ms 0.54% VecNorm_MPI 2ms 0.047% 85.62% 23ms 0.54% VecNorm_MPI_Default.constprop.0 0 0% 85.62% 23ms 0.54% orte_init 3ms 0.071% 85.69% 22ms 0.52% PetscHeaderCreate_Private