File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110272ms, 91.97% of 119902ms total Dropped 1135 nodes (cum <= 599.51ms) flat flat% sum% cum cum% 0 0% 0% 119886ms 100% __libc_start_call_main 0 0% 0% 119886ms 100% __libc_start_main_impl 0 0% 0% 119886ms 100% _start 0 0% 0% 119883ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119883ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119883ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119883ms 100% main 0 0% 0% 119849ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119849ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119849ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119849ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119849ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119849ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 118608ms 98.92% AbstractCardiacProblem::Solve 6ms 0.005% 0.0083% 117793ms 98.24% AbstractDynamicLinearPdeSolver::Solve 10ms 0.0083% 0.017% 66030ms 55.07% LinearSystem::Solve 3ms 0.0025% 0.019% 65485ms 54.62% KSPSolve 9ms 0.0075% 0.027% 65482ms 54.61% KSPSolve_Private 8ms 0.0067% 0.033% 65051ms 54.25% KSPSolve_SYMMLQ 201ms 0.17% 0.2% 42994ms 35.86% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.2% 36831ms 30.72% PCApply 3ms 0.0025% 0.21% 36821ms 30.71% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.21% 34295ms 28.60% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.21% 33164ms 27.66% PCApply_ICC 9ms 0.0075% 0.22% 33161ms 27.66% MatSolve 32647ms 27.23% 27.44% 33152ms 27.65% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1479ms 1.23% 28.68% 33077ms 27.59% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00083% 28.68% 31843ms 26.56% KSP_PCApply.lto_priv.18 6888ms 5.74% 34.42% 28597ms 23.85% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.005% 34.43% 22282ms 18.58% MatMult 251ms 0.21% 34.64% 22276ms 18.58% MatMult_SeqAIJ (partial-inline) 21774ms 18.16% 52.80% 22273ms 18.58% MatMult_SeqAIJ_Inode (inline) 1969ms 1.64% 54.44% 14763ms 12.31% CardiacNewtonSolver::Solve 353ms 0.29% 54.73% 9086ms 7.58% AbstractCardiacTissue::UpdateCaches (inline) 4452ms 3.71% 58.45% 8650ms 7.21% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2033ms 1.70% 60.14% 8526ms 7.11% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1101ms 0.92% 61.06% 7775ms 6.48% BidomainSolver::SetupLinearSystem 1137ms 0.95% 62.01% 7465ms 6.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00083% 62.01% 7002ms 5.84% KSP_PCApply (partial-inline) 5ms 0.0042% 62.01% 6457ms 5.39% KSPConvergedDefault 6091ms 5.08% 67.09% 6091ms 5.08% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3920ms 3.27% 70.36% 3975ms 3.32% __ieee754_log_fma 0 0% 70.36% 3727ms 3.11% boost::numeric::ublas::norm_inf (inline) 2513ms 2.10% 72.46% 3727ms 3.11% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.46% 3727ms 3.11% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.46% 3727ms 3.11% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 8ms 0.0067% 72.47% 3362ms 2.80% MatNullSpaceRemove 3253ms 2.71% 75.18% 3253ms 2.71% __memcpy_avx_unaligned_erms 0 0% 75.18% 3210ms 2.68% PetscMemcpy (inline) 35ms 0.029% 75.21% 3166ms 2.64% std::pow (inline) 425ms 0.35% 75.56% 3126ms 2.61% __pow 1716ms 1.43% 76.99% 2842ms 2.37% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2798ms 2.33% 79.33% 2798ms 2.33% ddot_ 29ms 0.024% 79.35% 2747ms 2.29% VecCopy 2ms 0.0017% 79.35% 2716ms 2.27% VecCopy_Seq (partial-inline) 356ms 0.3% 79.65% 2690ms 2.24% __ieee754_pow_fma 10ms 0.0083% 79.66% 2432ms 2.03% VecAXPY 3ms 0.0025% 79.66% 2422ms 2.02% VecAXPY_Seq 2407ms 2.01% 81.67% 2407ms 2.01% daxpy_ 4ms 0.0033% 81.67% 2251ms 1.88% VecDot 0 0% 81.67% 2247ms 1.87% VecDot_Seq 2ms 0.0017% 81.67% 2247ms 1.87% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.68% 2056ms 1.71% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.68% 1922ms 1.60% VecMDot 15ms 0.013% 81.69% 1922ms 1.60% VecMXDot_Private 1899ms 1.58% 83.27% 1904ms 1.59% VecMDot_Seq 29ms 0.024% 83.30% 1719ms 1.43% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1535ms 1.28% 84.58% 1592ms 1.33% exp_inline (inline) 1453ms 1.21% 85.79% 1453ms 1.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 5ms 0.0042% 85.79% 1432ms 1.19% VecMAXPY 1423ms 1.19% 86.98% 1427ms 1.19% VecMAXPY_Seq 0 0% 86.98% 1405ms 1.17% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1141ms 0.95% 87.93% 1141ms 0.95% __memset_avx2_unaligned_erms 0 0% 87.93% 1136ms 0.95% PetscMemzero (inline) 10ms 0.0083% 87.94% 1128ms 0.94% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.94% 1110ms 0.93% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.94% 1110ms 0.93% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.94% 1110ms 0.93% boost_numeric_ublas_abs (inline) 1110ms 0.93% 88.86% 1110ms 0.93% std::abs (inline) 230ms 0.19% 89.06% 1109ms 0.92% boost::numeric::ublas::indexing_matrix_assign 0 0% 89.06% 1092ms 0.91% CuboidMeshConstructor::Construct 0 0% 89.06% 1091ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 3ms 0.0025% 89.06% 1091ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 793ms 0.66% 89.72% 1054ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 89.72% 985ms 0.82% Element::Element 1ms 0.00083% 89.72% 962ms 0.8% VecDuplicate 2ms 0.0017% 89.72% 949ms 0.79% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.73% 915ms 0.76% AbstractTetrahedralElement::AbstractTetrahedralElement 12ms 0.01% 89.74% 871ms 0.73% boost::numeric::ublas::c_matrix::c_matrix (inline) 5ms 0.0042% 89.74% 868ms 0.72% BidomainAssembler::ComputeMatrixTerm 868ms 0.72% 90.46% 868ms 0.72% [libchaste_heart.so] 2ms 0.0017% 90.47% 863ms 0.72% VecScale 7ms 0.0058% 90.47% 861ms 0.72% VecScale_Seq 853ms 0.71% 91.18% 853ms 0.71% dscal_ 6ms 0.005% 91.19% 825ms 0.69% VecNorm 1ms 0.00083% 91.19% 812ms 0.68% VecNorm_Seq 9ms 0.0075% 91.20% 779ms 0.65% PetscMallocA 7ms 0.0058% 91.20% 770ms 0.64% PetscMallocAlign (partial-inline) 1ms 0.00083% 91.20% 750ms 0.63% BidomainProblem::WriteOneStep 700ms 0.58% 91.79% 700ms 0.58% log_inline (inline) 1ms 0.00083% 91.79% 682ms 0.57% AbstractBidomainSolver::FinaliseLinearSystem 217ms 0.18% 91.97% 680ms 0.57% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.97% 651ms 0.54% AbstractFeAssemblerInterface::Assemble (inline)