File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3752ms, 87.66% of 4280ms total Dropped 482 nodes (cum <= 21.40ms) flat flat% sum% cum cum% 0 0% 0% 4270ms 99.77% __libc_start_call_main 0 0% 0% 4270ms 99.77% __libc_start_main_impl 0 0% 0% 4270ms 99.77% _start 0 0% 0% 4267ms 99.70% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4267ms 99.70% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4267ms 99.70% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4267ms 99.70% main 0 0% 0% 4222ms 98.64% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4222ms 98.64% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4222ms 98.64% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 3ms 0.07% 0.07% 4213ms 98.43% AbstractCardiacProblem::Solve 1ms 0.023% 0.093% 4194ms 97.99% AbstractDynamicLinearPdeSolver::Solve 19ms 0.44% 0.54% 2193ms 51.24% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 0.58% 1566ms 36.59% LinearSystem::Solve 1ms 0.023% 0.61% 1519ms 35.49% KSPSolve 3ms 0.07% 0.68% 1519ms 35.49% KSPSolve_Private 2ms 0.047% 0.72% 1461ms 34.14% KSPSolve_SYMMLQ 20ms 0.47% 1.19% 1227ms 28.67% AbstractCardiacCell::ComputeExceptVoltage 30ms 0.7% 1.89% 1057ms 24.70% AbstractOneStepIvpOdeSolver::InternalSolve 4ms 0.093% 1.99% 912ms 21.31% PCApply 0 0% 1.99% 905ms 21.14% PCApply_BJacobi_Singleblock 61ms 1.43% 3.41% 886ms 20.70% EulerIvpOdeSolver::CalculateNextYValue 238ms 5.56% 8.97% 816ms 19.07% CellLuoRudy1991FromCellML::EvaluateYDerivatives 29ms 0.68% 9.65% 796ms 18.60% AbstractCardiacTissue::UpdateCaches (inline) 1ms 0.023% 9.67% 773ms 18.06% KSPSolve_PREONLY (partial-inline) 334ms 7.80% 17.48% 744ms 17.38% __GI___exp 268ms 6.26% 23.74% 729ms 17.03% CellLuoRudy1991FromCellML::GetIIonic 2ms 0.047% 23.79% 723ms 16.89% MatSolve 0 0% 23.79% 723ms 16.89% PCApply_ICC 712ms 16.64% 40.42% 719ms 16.80% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 40.42% 669ms 15.63% KSP_PCApply.lto_priv.18 5ms 0.12% 40.54% 455ms 10.63% MatMult 11ms 0.26% 40.79% 443ms 10.35% MatMult_SeqAIJ (partial-inline) 428ms 10.00% 50.79% 443ms 10.35% MatMult_SeqAIJ_Inode (inline) 339ms 7.92% 58.71% 392ms 9.16% __ieee754_exp_fma 78ms 1.82% 60.54% 375ms 8.76% BidomainSolver::SetupLinearSystem 0 0% 60.54% 332ms 7.76% KSPConvergedDefault 0 0% 60.54% 331ms 7.73% KSP_PCApply (partial-inline) 1ms 0.023% 60.56% 223ms 5.21% std::pow (inline) 15ms 0.35% 60.91% 222ms 5.19% __pow 22ms 0.51% 61.43% 207ms 4.84% __ieee754_pow_fma 3ms 0.07% 61.50% 143ms 3.34% MatNullSpaceRemove 105ms 2.45% 63.95% 105ms 2.45% log_inline (inline) 46ms 1.07% 65.02% 104ms 2.43% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 65.02% 90ms 2.10% VecMDot 3ms 0.07% 65.09% 90ms 2.10% VecMXDot_Private 16ms 0.37% 65.47% 82ms 1.92% MPI_Wtime 0 0% 65.47% 82ms 1.92% VecDuplicate 76ms 1.78% 67.24% 76ms 1.78% ddot_ 68ms 1.59% 68.83% 70ms 1.64% exp_inline (inline) 24ms 0.56% 69.39% 67ms 1.57% TimeStepper::TimeStepper 2ms 0.047% 69.44% 66ms 1.54% __GI___clock_gettime 64ms 1.50% 70.93% 64ms 1.50% [[vdso]] 12ms 0.28% 71.21% 60ms 1.40% PetscLogEventEndDefault 59ms 1.38% 72.59% 60ms 1.40% VecMDot_Seq 59ms 1.38% 73.97% 59ms 1.38% [libchaste_heart.so] 9ms 0.21% 74.18% 58ms 1.36% PetscLogEventBeginDefault 5ms 0.12% 74.30% 55ms 1.29% VecCopy 9ms 0.21% 74.51% 52ms 1.21% AbstractCardiacCell::SetVoltage (partial-inline) 2ms 0.047% 74.56% 52ms 1.21% VecDot 16ms 0.37% 74.93% 50ms 1.17% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 74.93% 50ms 1.17% AbstractBidomainSolver::FinaliseLinearSystem 4ms 0.093% 75.02% 50ms 1.17% VecMAXPY 4ms 0.093% 75.12% 50ms 1.17% VecNorm 39ms 0.91% 76.03% 48ms 1.12% top12 (inline) 1ms 0.023% 76.05% 47ms 1.10% VecAXPY 0 0% 76.05% 47ms 1.10% VecDot_Seq 0 0% 76.05% 47ms 1.10% VecXDot_Seq_Private.constprop.0 1ms 0.023% 76.07% 46ms 1.07% VecDestroy 0 0% 76.07% 44ms 1.03% VecNorm_Seq 6ms 0.14% 76.21% 43ms 1.00% PetscMallocA 1ms 0.023% 76.24% 43ms 1.00% VecDuplicate_MPI 43ms 1.00% 77.24% 43ms 1.00% __memcpy_avx_unaligned_erms 42ms 0.98% 78.22% 42ms 0.98% TimeStepper::CalculateNextTime 0 0% 78.22% 40ms 0.93% CxxTest::RealWorldDescription::setUp 0 0% 78.22% 40ms 0.93% PMPI_Init_thread 0 0% 78.22% 40ms 0.93% PetscInitialize 0 0% 78.22% 40ms 0.93% PetscSetup::setUpWorld 0 0% 78.22% 40ms 0.93% PetscSetupUtils::CommonSetup 0 0% 78.22% 40ms 0.93% PetscSetupUtils::InitialisePetsc 39ms 0.91% 79.14% 40ms 0.93% __ieee754_log_fma 0 0% 79.14% 40ms 0.93% ompi_mpi_init 0 0% 79.14% 39ms 0.91% VecDuplicate_Seq 2ms 0.047% 79.18% 38ms 0.89% 5ms 0.12% 79.30% 37ms 0.86% PetscMallocAlign 32ms 0.75% 80.05% 36ms 0.84% AbstractParameterisedSystem::SetAnyVariable 26ms 0.61% 80.65% 35ms 0.82% AbstractOneStepIvpOdeSolver::Solve 35ms 0.82% 81.47% 35ms 0.82% DistributedVector::Stripe::operator[] (inline) 30ms 0.7% 82.17% 34ms 0.79% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 82.17% 34ms 0.79% PetscMemcpy (inline) 3ms 0.07% 82.24% 33ms 0.77% VecCreate 1ms 0.023% 82.27% 32ms 0.75% VecAXPY_Seq 16ms 0.37% 82.64% 31ms 0.72% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 30ms 0.7% 83.34% 30ms 0.7% daxpy_ 29ms 0.68% 84.02% 29ms 0.68% VecMAXPY_Seq 0 0% 84.02% 27ms 0.63% VecNorm_MPI 0 0% 84.02% 27ms 0.63% VecNorm_MPI_Default.constprop.0 27ms 0.63% 84.65% 27ms 0.63% asuint64 (inline) 20ms 0.47% 85.12% 26ms 0.61% AbstractParameterisedSystem::GetAnyVariable 26ms 0.61% 85.72% 26ms 0.61% DistributedVector::Iterator::operator!= 0 0% 85.72% 25ms 0.58% VecCopy_Seq (partial-inline) 0 0% 85.72% 24ms 0.56% orte_init 14ms 0.33% 86.05% 23ms 0.54% TimeStepper::AdvanceOneTimeStep 3ms 0.07% 86.12% 23ms 0.54% VecCreate_MPI_Private 0 0% 86.12% 22ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 22ms 0.51% 86.64% 22ms 0.51% DistributedVector::End 22ms 0.51% 87.15% 22ms 0.51% TimeStepper::GetNextTimeStep 22ms 0.51% 87.66% 22ms 0.51% __memset_avx2_unaligned_erms