File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3684ms, 86.83% of 4243ms total Dropped 455 nodes (cum <= 21.21ms) flat flat% sum% cum cum% 0 0% 0% 4236ms 99.84% __libc_start_call_main 0 0% 0% 4236ms 99.84% __libc_start_main_impl 0 0% 0% 4236ms 99.84% _start 0 0% 0% 4234ms 99.79% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4234ms 99.79% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4234ms 99.79% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4234ms 99.79% main 0 0% 0% 4196ms 98.89% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4196ms 98.89% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4196ms 98.89% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4188ms 98.70% AbstractCardiacProblem::Solve 2ms 0.047% 0.047% 4173ms 98.35% AbstractDynamicLinearPdeSolver::Solve 13ms 0.31% 0.35% 2182ms 51.43% AbstractCardiacTissue::SolveCellSystems 0 0% 0.35% 1718ms 40.49% LinearSystem::Solve 0 0% 0.35% 1670ms 39.36% KSPSolve 6ms 0.14% 0.49% 1670ms 39.36% KSPSolve_Private 3ms 0.071% 0.57% 1601ms 37.73% KSPSolve_SYMMLQ 31ms 0.73% 1.30% 1263ms 29.77% AbstractCardiacCell::ComputeExceptVoltage 28ms 0.66% 1.96% 1069ms 25.19% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.047% 2.00% 1058ms 24.94% PCApply 1ms 0.024% 2.03% 1047ms 24.68% PCApply_BJacobi_Singleblock 51ms 1.20% 3.23% 909ms 21.42% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.23% 905ms 21.33% KSPSolve_PREONLY (partial-inline) 2ms 0.047% 3.28% 861ms 20.29% MatSolve 0 0% 3.28% 861ms 20.29% PCApply_ICC 789ms 18.60% 21.87% 855ms 20.15% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 226ms 5.33% 27.20% 850ms 20.03% CellLuoRudy1991FromCellML::EvaluateYDerivatives 356ms 8.39% 35.59% 786ms 18.52% __GI___exp 0 0% 35.59% 761ms 17.94% KSP_PCApply.lto_priv.18 25ms 0.59% 36.18% 719ms 16.95% AbstractCardiacTissue::UpdateCaches (inline) 251ms 5.92% 42.09% 680ms 16.03% CellLuoRudy1991FromCellML::GetIIonic 380ms 8.96% 51.05% 413ms 9.73% __ieee754_exp_fma 2ms 0.047% 51.10% 387ms 9.12% KSPConvergedDefault 2ms 0.047% 51.14% 387ms 9.12% MatMult 5ms 0.12% 51.26% 380ms 8.96% MatMult_SeqAIJ 371ms 8.74% 60.00% 379ms 8.93% MatMult_SeqAIJ_Inode (inline) 0 0% 60.00% 366ms 8.63% KSP_PCApply (partial-inline) 32ms 0.75% 60.76% 232ms 5.47% BidomainSolver::SetupLinearSystem 23ms 0.54% 61.30% 220ms 5.19% __pow 0 0% 61.30% 220ms 5.19% std::pow (inline) 25ms 0.59% 61.89% 197ms 4.64% __ieee754_pow_fma 62ms 1.46% 63.35% 139ms 3.28% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 63.35% 124ms 2.92% MatNullSpaceRemove 111ms 2.62% 65.97% 111ms 2.62% __memcpy_avx_unaligned_erms 0 0% 65.97% 110ms 2.59% VecDuplicate 0 0% 65.97% 100ms 2.36% PetscMemcpy (inline) 98ms 2.31% 68.28% 98ms 2.31% log_inline (inline) 0 0% 68.28% 81ms 1.91% VecMDot 4ms 0.094% 68.37% 81ms 1.91% VecMXDot_Private 26ms 0.61% 68.98% 77ms 1.81% MPI_Wtime 70ms 1.65% 70.63% 70ms 1.65% exp_inline (inline) 66ms 1.56% 72.19% 66ms 1.56% ddot_ 13ms 0.31% 72.50% 64ms 1.51% PetscLogEventEndDefault 4ms 0.094% 72.59% 64ms 1.51% VecCopy 60ms 1.41% 74.00% 64ms 1.51% VecMDot_Seq 2ms 0.047% 74.05% 63ms 1.48% VecDuplicate_MPI 10ms 0.24% 74.29% 59ms 1.39% PetscLogEventBeginDefault 34ms 0.8% 75.09% 58ms 1.37% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 6ms 0.14% 75.23% 56ms 1.32% VecAXPY 1ms 0.024% 75.25% 56ms 1.32% VecDot 28ms 0.66% 75.91% 55ms 1.30% TimeStepper::TimeStepper 1ms 0.024% 75.94% 51ms 1.20% __GI___clock_gettime 0 0% 75.94% 50ms 1.18% VecDestroy 50ms 1.18% 77.12% 50ms 1.18% [[vdso]] 12ms 0.28% 77.40% 48ms 1.13% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 77.40% 47ms 1.11% VecDuplicate_Seq 1ms 0.024% 77.42% 45ms 1.06% KSP_RemoveNullSpace (inline) 4ms 0.094% 77.52% 45ms 1.06% PetscMallocA 0 0% 77.52% 45ms 1.06% VecNorm 3ms 0.071% 77.59% 44ms 1.04% VecCreate 0 0% 77.59% 44ms 1.04% VecDot_Seq 0 0% 77.59% 44ms 1.04% VecXDot_Seq_Private.constprop.0 1ms 0.024% 77.61% 43ms 1.01% VecMAXPY 1ms 0.024% 77.63% 42ms 0.99% PetscMallocAlign (partial-inline) 0 0% 77.63% 40ms 0.94% VecNorm_Seq 2ms 0.047% 77.68% 37ms 0.87% VecCreate_MPI_Private 35ms 0.82% 78.51% 36ms 0.85% __ieee754_log_fma 15ms 0.35% 78.86% 36ms 0.85% top12 (inline) 23ms 0.54% 79.40% 35ms 0.82% AbstractOneStepIvpOdeSolver::Solve 35ms 0.82% 80.23% 35ms 0.82% TimeStepper::CalculateNextTime 1ms 0.024% 80.25% 35ms 0.82% VecCopy_Seq (partial-inline) 31ms 0.73% 80.98% 34ms 0.8% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 80.98% 34ms 0.8% CxxTest::RealWorldDescription::setUp 0 0% 80.98% 34ms 0.8% PetscInitialize 0 0% 80.98% 34ms 0.8% PetscSetup::setUpWorld 0 0% 80.98% 34ms 0.8% PetscSetupUtils::CommonSetup 0 0% 80.98% 34ms 0.8% PetscSetupUtils::InitialisePetsc 1ms 0.024% 81.00% 33ms 0.78% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 81.00% 33ms 0.78% PMPI_Init_thread 0 0% 81.00% 33ms 0.78% ompi_mpi_init 8ms 0.19% 81.19% 32ms 0.75% AbstractBidomainSolver::CheckCompatibilityCondition 31ms 0.73% 81.92% 32ms 0.75% AbstractParameterisedSystem::SetAnyVariable 0 0% 81.92% 31ms 0.73% PetscMemzero (inline) 0 0% 81.92% 31ms 0.73% VecAXPY_Seq 31ms 0.73% 82.65% 31ms 0.73% __memset_avx2_unaligned_erms 30ms 0.71% 83.36% 30ms 0.71% std::isinf (inline) 27ms 0.64% 84.00% 29ms 0.68% VecMAXPY_Seq 0 0% 84.00% 28ms 0.66% 28ms 0.66% 84.66% 28ms 0.66% daxpy_ 0 0% 84.66% 27ms 0.64% VecNorm_MPI 0 0% 84.66% 27ms 0.64% VecNorm_MPI_Default.constprop.0 3ms 0.071% 84.73% 26ms 0.61% PetscHeaderDestroy_Private 0 0% 84.73% 26ms 0.61% VecSetType 22ms 0.52% 85.25% 25ms 0.59% AbstractParameterisedSystem::GetAnyVariable 14ms 0.33% 85.58% 25ms 0.59% TimeStepper::AdvanceOneTimeStep 0 0% 85.58% 25ms 0.59% VecCreate_Seq 2ms 0.047% 85.62% 24ms 0.57% VecSet 24ms 0.57% 86.19% 24ms 0.57% [libchaste_heart.so] 23ms 0.54% 86.73% 23ms 0.54% asuint64 (inline) 0 0% 86.73% 23ms 0.54% orte_init 4ms 0.094% 86.83% 22ms 0.52% __GI___libc_malloc