File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110931ms, 91.88% of 120734ms total Dropped 1174 nodes (cum <= 603.67ms) flat flat% sum% cum cum% 0 0% 0% 120717ms 100% __libc_start_call_main 0 0% 0% 120717ms 100% __libc_start_main_impl 0 0% 0% 120717ms 100% _start 0 0% 0% 120714ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120714ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120714ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120714ms 100% main 0 0% 0% 120675ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120675ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120675ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120675ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120675ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 120674ms 100% AbstractConvergenceTester::Converge 4ms 0.0033% 0.0033% 119425ms 98.92% AbstractCardiacProblem::Solve 12ms 0.0099% 0.013% 118581ms 98.22% AbstractDynamicLinearPdeSolver::Solve 6ms 0.005% 0.018% 66977ms 55.47% LinearSystem::Solve 4ms 0.0033% 0.022% 66423ms 55.02% KSPSolve 13ms 0.011% 0.032% 66420ms 55.01% KSPSolve_Private 9ms 0.0075% 0.04% 66004ms 54.67% KSPSolve_SYMMLQ 206ms 0.17% 0.21% 42710ms 35.38% AbstractCardiacTissue::SolveCellSystems 4ms 0.0033% 0.21% 36927ms 30.59% PCApply 4ms 0.0033% 0.22% 36910ms 30.57% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.22% 34135ms 28.27% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.22% 32990ms 27.32% PCApply_ICC 9ms 0.0075% 0.23% 32988ms 27.32% MatSolve 32465ms 26.89% 27.12% 32979ms 27.32% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1370ms 1.13% 28.25% 32968ms 27.31% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 28.25% 31930ms 26.45% KSP_PCApply.lto_priv.18 6694ms 5.54% 33.80% 28576ms 23.67% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.005% 33.80% 22952ms 19.01% MatMult 1054ms 0.87% 34.68% 22946ms 19.01% MatMult_SeqAIJ (partial-inline) 21665ms 17.94% 52.62% 22150ms 18.35% MatMult_SeqAIJ_Inode (inline) 2013ms 1.67% 54.29% 14883ms 12.33% CardiacNewtonSolver::Solve 310ms 0.26% 54.54% 8892ms 7.36% AbstractCardiacTissue::UpdateCaches (inline) 4414ms 3.66% 58.20% 8632ms 7.15% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1934ms 1.60% 59.80% 8381ms 6.94% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1134ms 0.94% 60.74% 7936ms 6.57% BidomainSolver::SetupLinearSystem 1126ms 0.93% 61.67% 7386ms 6.12% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00083% 61.68% 6962ms 5.77% KSP_PCApply (partial-inline) 4ms 0.0033% 61.68% 6363ms 5.27% KSPConvergedDefault 5997ms 4.97% 66.65% 5997ms 4.97% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3920ms 3.25% 69.89% 3956ms 3.28% __ieee754_log_fma 0 0% 69.89% 3803ms 3.15% boost::numeric::ublas::norm_inf (inline) 2574ms 2.13% 72.02% 3803ms 3.15% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.02% 3803ms 3.15% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.02% 3803ms 3.15% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0058% 72.03% 3434ms 2.84% MatNullSpaceRemove 3417ms 2.83% 74.86% 3417ms 2.83% __memcpy_avx_unaligned_erms 0 0% 74.86% 3387ms 2.81% PetscMemcpy (inline) 30ms 0.025% 74.89% 3197ms 2.65% std::pow (inline) 390ms 0.32% 75.21% 3163ms 2.62% __pow 22ms 0.018% 75.23% 2916ms 2.42% VecCopy 3ms 0.0025% 75.23% 2890ms 2.39% VecCopy_Seq (partial-inline) 2872ms 2.38% 77.61% 2872ms 2.38% ddot_ 1713ms 1.42% 79.03% 2836ms 2.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 386ms 0.32% 79.35% 2762ms 2.29% __ieee754_pow_fma 15ms 0.012% 79.36% 2579ms 2.14% VecAXPY 6ms 0.005% 79.36% 2564ms 2.12% VecAXPY_Seq 2546ms 2.11% 81.47% 2546ms 2.11% daxpy_ 3ms 0.0025% 81.47% 2385ms 1.98% VecDot 0 0% 81.47% 2382ms 1.97% VecDot_Seq 0 0% 81.47% 2382ms 1.97% VecXDot_Seq_Private.constprop.0 1ms 0.00083% 81.48% 2083ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00083% 81.48% 2003ms 1.66% VecMDot 18ms 0.015% 81.49% 2002ms 1.66% VecMXDot_Private 1970ms 1.63% 83.12% 1977ms 1.64% VecMDot_Seq 39ms 0.032% 83.16% 1709ms 1.42% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1559ms 1.29% 84.45% 1606ms 1.33% exp_inline (inline) 1530ms 1.27% 85.71% 1530ms 1.27% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.71% 1435ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 4ms 0.0033% 85.72% 1424ms 1.18% VecMAXPY 1417ms 1.17% 86.89% 1420ms 1.18% VecMAXPY_Seq 1237ms 1.02% 87.92% 1237ms 1.02% __memset_avx2_unaligned_erms 0 0% 87.92% 1228ms 1.02% PetscMemzero (inline) 0 0% 87.92% 1121ms 0.93% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.92% 1121ms 0.93% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.92% 1121ms 0.93% boost_numeric_ublas_abs (inline) 1121ms 0.93% 88.84% 1121ms 0.93% std::abs (inline) 4ms 0.0033% 88.85% 1117ms 0.93% boost::numeric::ublas::matrix_assign (inline) 218ms 0.18% 89.03% 1111ms 0.92% boost::numeric::ublas::indexing_matrix_assign 0 0% 89.03% 1098ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 89.03% 1098ms 0.91% CuboidMeshConstructor::Construct 1ms 0.00083% 89.03% 1098ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 795ms 0.66% 89.69% 1067ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 3ms 0.0025% 89.69% 995ms 0.82% VecDuplicate 0 0% 89.69% 989ms 0.82% Element::Element 2ms 0.0017% 89.69% 978ms 0.81% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00083% 89.69% 925ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 4ms 0.0033% 89.70% 880ms 0.73% BidomainAssembler::ComputeMatrixTerm 6ms 0.005% 89.70% 860ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 4ms 0.0033% 89.70% 856ms 0.71% VecScale 2ms 0.0017% 89.71% 852ms 0.71% VecScale_Seq 845ms 0.7% 90.41% 845ms 0.7% dscal_ 833ms 0.69% 91.10% 833ms 0.69% [libchaste_heart.so] 11ms 0.0091% 91.10% 821ms 0.68% PetscMallocA 4ms 0.0033% 91.11% 810ms 0.67% PetscMallocAlign (partial-inline) 0 0% 91.11% 776ms 0.64% BidomainProblem::WriteOneStep 2ms 0.0017% 91.11% 769ms 0.64% VecNorm 0 0% 91.11% 756ms 0.63% VecNorm_Seq 728ms 0.6% 91.71% 728ms 0.6% log_inline (inline) 2ms 0.0017% 91.71% 657ms 0.54% AbstractBidomainSolver::FinaliseLinearSystem 194ms 0.16% 91.87% 653ms 0.54% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.87% 648ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 7ms 0.0058% 91.88% 633ms 0.52% VecDuplicate_Seq