File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3677ms, 86.44% of 4254ms total Dropped 480 nodes (cum <= 21.27ms) flat flat% sum% cum cum% 0 0% 0% 4246ms 99.81% __libc_start_call_main 0 0% 0% 4246ms 99.81% __libc_start_main_impl 0 0% 0% 4246ms 99.81% _start 0 0% 0% 4243ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4243ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4243ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4243ms 99.74% main 0 0% 0% 4197ms 98.66% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4197ms 98.66% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4197ms 98.66% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4188ms 98.45% AbstractCardiacProblem::Solve 3ms 0.071% 0.094% 4166ms 97.93% AbstractDynamicLinearPdeSolver::Solve 12ms 0.28% 0.38% 2251ms 52.91% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.4% 1566ms 36.81% LinearSystem::Solve 0 0% 0.4% 1510ms 35.50% KSPSolve 5ms 0.12% 0.52% 1510ms 35.50% KSPSolve_Private 2ms 0.047% 0.56% 1464ms 34.41% KSPSolve_SYMMLQ 17ms 0.4% 0.96% 1251ms 29.41% AbstractCardiacCell::ComputeExceptVoltage 20ms 0.47% 1.43% 1066ms 25.06% AbstractOneStepIvpOdeSolver::InternalSolve 3ms 0.071% 1.50% 939ms 22.07% PCApply 0 0% 1.50% 930ms 21.86% PCApply_BJacobi_Singleblock 44ms 1.03% 2.54% 891ms 20.94% EulerIvpOdeSolver::CalculateNextYValue 223ms 5.24% 7.78% 836ms 19.65% CellLuoRudy1991FromCellML::EvaluateYDerivatives 35ms 0.82% 8.60% 822ms 19.32% AbstractCardiacTissue::UpdateCaches (inline) 2ms 0.047% 8.65% 784ms 18.43% KSPSolve_PREONLY (partial-inline) 378ms 8.89% 17.54% 784ms 18.43% __GI___exp 218ms 5.12% 22.66% 742ms 17.44% CellLuoRudy1991FromCellML::GetIIonic 4ms 0.094% 22.76% 742ms 17.44% MatSolve 0 0% 22.76% 742ms 17.44% PCApply_ICC 729ms 17.14% 39.89% 733ms 17.23% MatSolve_SeqSBAIJ_1_NaturalOrdering 1ms 0.024% 39.92% 663ms 15.59% KSP_PCApply.lto_priv.18 3ms 0.071% 39.99% 429ms 10.08% MatMult 8ms 0.19% 40.17% 423ms 9.94% MatMult_SeqAIJ (partial-inline) 411ms 9.66% 49.84% 423ms 9.94% MatMult_SeqAIJ_Inode (inline) 317ms 7.45% 57.29% 388ms 9.12% __ieee754_exp_fma 0 0% 57.29% 347ms 8.16% KSPConvergedDefault 1ms 0.024% 57.31% 341ms 8.02% KSP_PCApply (partial-inline) 58ms 1.36% 58.67% 298ms 7.01% BidomainSolver::SetupLinearSystem 23ms 0.54% 59.21% 267ms 6.28% __pow 0 0% 59.21% 267ms 6.28% std::pow (inline) 23ms 0.54% 59.76% 244ms 5.74% __ieee754_pow_fma 124ms 2.91% 62.67% 124ms 2.91% log_inline (inline) 0 0% 62.67% 111ms 2.61% MatNullSpaceRemove 57ms 1.34% 64.01% 110ms 2.59% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 64.01% 91ms 2.14% VecDuplicate 81ms 1.90% 65.91% 84ms 1.97% exp_inline (inline) 13ms 0.31% 66.22% 77ms 1.81% AbstractCardiacCell::SetVoltage (partial-inline) 75ms 1.76% 67.98% 75ms 1.76% ddot_ 24ms 0.56% 68.55% 74ms 1.74% MPI_Wtime 30ms 0.71% 69.25% 67ms 1.57% TimeStepper::TimeStepper 0 0% 69.25% 62ms 1.46% VecMDot 3ms 0.071% 69.32% 62ms 1.46% VecMXDot_Private 0 0% 69.32% 61ms 1.43% VecDestroy 50ms 1.18% 70.50% 59ms 1.39% top12 (inline) 53ms 1.25% 71.74% 57ms 1.34% AbstractParameterisedSystem::SetAnyVariable 1ms 0.024% 71.77% 55ms 1.29% VecDot 6ms 0.14% 71.91% 53ms 1.25% VecCopy 1ms 0.024% 71.93% 53ms 1.25% VecDuplicate_MPI 7ms 0.16% 72.10% 50ms 1.18% PetscLogEventBeginDefault 0 0% 72.10% 50ms 1.18% VecDot_Seq 3ms 0.071% 72.17% 50ms 1.18% VecNorm 0 0% 72.17% 50ms 1.18% VecXDot_Seq_Private.constprop.0 50ms 1.18% 73.34% 50ms 1.18% [libchaste_heart.so] 2ms 0.047% 73.39% 49ms 1.15% VecMAXPY 3ms 0.071% 73.46% 49ms 1.15% __GI___clock_gettime 48ms 1.13% 74.59% 48ms 1.13% __memcpy_avx_unaligned_erms 47ms 1.10% 75.69% 47ms 1.10% __ieee754_log_fma 8ms 0.19% 75.88% 46ms 1.08% PetscLogEventEndDefault 46ms 1.08% 76.96% 46ms 1.08% [[vdso]] 44ms 1.03% 78.00% 44ms 1.03% VecMDot_Seq 9ms 0.21% 78.21% 43ms 1.01% PetscMallocA 6ms 0.14% 78.35% 43ms 1.01% VecAXPY 10ms 0.24% 78.58% 42ms 0.99% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.58% 42ms 0.99% AbstractBidomainSolver::FinaliseLinearSystem 42ms 0.99% 79.57% 42ms 0.99% TimeStepper::CalculateNextTime 0 0% 79.57% 41ms 0.96% CxxTest::RealWorldDescription::setUp 0 0% 79.57% 41ms 0.96% PetscInitialize 0 0% 79.57% 41ms 0.96% PetscSetup::setUpWorld 0 0% 79.57% 41ms 0.96% PetscSetupUtils::CommonSetup 0 0% 79.57% 41ms 0.96% PetscSetupUtils::InitialisePetsc 0 0% 79.57% 41ms 0.96% VecCreate 1ms 0.024% 79.60% 41ms 0.96% VecNorm_Seq 0 0% 79.60% 40ms 0.94% PMPI_Init_thread 0 0% 79.60% 40ms 0.94% ompi_mpi_init 28ms 0.66% 80.25% 39ms 0.92% AbstractOneStepIvpOdeSolver::Solve 0 0% 80.25% 38ms 0.89% VecDuplicate_Seq 34ms 0.8% 81.05% 37ms 0.87% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 37ms 0.87% 81.92% 37ms 0.87% asuint64 (inline) 14ms 0.33% 82.25% 35ms 0.82% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 34ms 0.8% 83.05% 34ms 0.8% DistributedVector::Iterator::operator!= 1ms 0.024% 83.07% 34ms 0.8% PetscMallocAlign 0 0% 83.07% 32ms 0.75% 0 0% 83.07% 31ms 0.73% VecNorm_MPI 0 0% 83.07% 31ms 0.73% VecNorm_MPI_Default.constprop.0 0 0% 83.07% 30ms 0.71% PetscMemcpy (inline) 0 0% 83.07% 29ms 0.68% KSP_RemoveNullSpace (inline) 4ms 0.094% 83.17% 29ms 0.68% PetscHeaderDestroy_Private 24ms 0.56% 83.73% 29ms 0.68% VecMAXPY_Seq 1ms 0.024% 83.76% 27ms 0.63% VecCreate_MPI_Private 0 0% 83.76% 27ms 0.63% std::vector::_M_assign_aux (inline) 0 0% 83.76% 27ms 0.63% std::vector::assign (inline) 21ms 0.49% 84.25% 26ms 0.61% AbstractParameterisedSystem::GetAnyVariable 26ms 0.61% 84.86% 26ms 0.61% RegularStimulus::GetStimulus 11ms 0.26% 85.12% 26ms 0.61% TimeStepper::AdvanceOneTimeStep 0 0% 85.12% 25ms 0.59% VecCopy_Seq (partial-inline) 4ms 0.094% 85.21% 25ms 0.59% std::__copy_move::__copy_m (inline) 0 0% 85.21% 25ms 0.59% std::__copy_move_a (inline) 0 0% 85.21% 25ms 0.59% std::__copy_move_a1 (inline) 0 0% 85.21% 25ms 0.59% std::__copy_move_a2 (inline) 0 0% 85.21% 25ms 0.59% std::copy (inline) 1ms 0.024% 85.24% 24ms 0.56% VecAXPY_Seq 0 0% 85.24% 24ms 0.56% orte_init 6ms 0.14% 85.38% 23ms 0.54% PMPI_Comm_get_attr 23ms 0.54% 85.92% 23ms 0.54% daxpy_ 0 0% 85.92% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 22ms 0.52% 86.44% 22ms 0.52% __memset_avx2_unaligned_erms