File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3788ms, 87.81% of 4314ms total Dropped 495 nodes (cum <= 21.57ms) flat flat% sum% cum cum% 0 0% 0% 4306ms 99.81% __libc_start_call_main 0 0% 0% 4306ms 99.81% __libc_start_main_impl 0 0% 0% 4306ms 99.81% _start 0 0% 0% 4303ms 99.75% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4303ms 99.75% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4303ms 99.75% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4303ms 99.75% main 0 0% 0% 4261ms 98.77% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4261ms 98.77% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4261ms 98.77% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 2ms 0.046% 0.046% 4255ms 98.63% AbstractCardiacProblem::Solve 0 0% 0.046% 4238ms 98.24% AbstractDynamicLinearPdeSolver::Solve 14ms 0.32% 0.37% 2102ms 48.73% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.39% 1705ms 39.52% LinearSystem::Solve 0 0% 0.39% 1650ms 38.25% KSPSolve 3ms 0.07% 0.46% 1650ms 38.25% KSPSolve_Private 3ms 0.07% 0.53% 1604ms 37.18% KSPSolve_SYMMLQ 30ms 0.7% 1.23% 1184ms 27.45% AbstractCardiacCell::ComputeExceptVoltage 32ms 0.74% 1.97% 1018ms 23.60% AbstractOneStepIvpOdeSolver::InternalSolve 1ms 0.023% 1.99% 993ms 23.02% PCApply 2ms 0.046% 2.04% 983ms 22.79% PCApply_BJacobi_Singleblock 0 0% 2.04% 840ms 19.47% KSPSolve_PREONLY (partial-inline) 52ms 1.21% 3.25% 817ms 18.94% EulerIvpOdeSolver::CalculateNextYValue 6ms 0.14% 3.38% 789ms 18.29% MatSolve 0 0% 3.38% 789ms 18.29% PCApply_ICC 770ms 17.85% 21.23% 774ms 17.94% MatSolve_SeqSBAIJ_1_NaturalOrdering 222ms 5.15% 26.38% 757ms 17.55% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 26.38% 753ms 17.45% KSP_PCApply.lto_priv.18 19ms 0.44% 26.82% 737ms 17.08% AbstractCardiacTissue::UpdateCaches (inline) 254ms 5.89% 32.71% 688ms 15.95% CellLuoRudy1991FromCellML::GetIIonic 307ms 7.12% 39.82% 669ms 15.51% __GI___exp 4ms 0.093% 39.92% 497ms 11.52% MatMult 8ms 0.19% 40.10% 482ms 11.17% MatMult_SeqAIJ (partial-inline) 473ms 10.96% 51.07% 482ms 11.17% MatMult_SeqAIJ_Inode (inline) 66ms 1.53% 52.60% 369ms 8.55% BidomainSolver::SetupLinearSystem 287ms 6.65% 59.25% 341ms 7.90% __ieee754_exp_fma 1ms 0.023% 59.27% 332ms 7.70% KSPConvergedDefault 0 0% 59.27% 317ms 7.35% KSP_PCApply (partial-inline) 18ms 0.42% 59.69% 228ms 5.29% __pow 0 0% 59.69% 228ms 5.29% std::pow (inline) 23ms 0.53% 60.22% 210ms 4.87% __ieee754_pow_fma 1ms 0.023% 60.25% 142ms 3.29% MatNullSpaceRemove 58ms 1.34% 61.59% 109ms 2.53% CellLuoRudy1991FromCellML::VerifyStateVariables 105ms 2.43% 64.02% 105ms 2.43% log_inline (inline) 22ms 0.51% 64.53% 104ms 2.41% MPI_Wtime 0 0% 64.53% 88ms 2.04% VecMDot 5ms 0.12% 64.65% 88ms 2.04% VecMXDot_Private 0 0% 64.65% 87ms 2.02% VecDuplicate 4ms 0.093% 64.74% 82ms 1.90% __GI___clock_gettime 82ms 1.90% 66.64% 82ms 1.90% ddot_ 14ms 0.32% 66.97% 81ms 1.88% PetscLogEventEndDefault 33ms 0.76% 67.73% 80ms 1.85% TimeStepper::TimeStepper 9ms 0.21% 67.94% 80ms 1.85% VecCopy 78ms 1.81% 69.75% 78ms 1.81% [[vdso]] 73ms 1.69% 71.44% 76ms 1.76% exp_inline (inline) 11ms 0.25% 71.70% 70ms 1.62% PetscLogEventBeginDefault 61ms 1.41% 73.11% 64ms 1.48% VecMDot_Seq 0 0% 73.11% 60ms 1.39% VecDot 18ms 0.42% 73.53% 55ms 1.27% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 73.53% 55ms 1.27% AbstractBidomainSolver::FinaliseLinearSystem 55ms 1.27% 74.80% 55ms 1.27% [libchaste_heart.so] 0 0% 74.80% 53ms 1.23% VecDot_Seq 1ms 0.023% 74.83% 53ms 1.23% VecDuplicate_MPI 4ms 0.093% 74.92% 53ms 1.23% VecMAXPY 0 0% 74.92% 53ms 1.23% VecXDot_Seq_Private.constprop.0 51ms 1.18% 76.10% 51ms 1.18% TimeStepper::CalculateNextTime 3ms 0.07% 76.17% 51ms 1.18% VecAXPY 1ms 0.023% 76.19% 51ms 1.18% VecNorm 1ms 0.023% 76.22% 47ms 1.09% KSP_RemoveNullSpace (inline) 0 0% 76.22% 46ms 1.07% VecNorm_Seq 3ms 0.07% 76.29% 45ms 1.04% VecDestroy 45ms 1.04% 77.33% 45ms 1.04% __memcpy_avx_unaligned_erms 33ms 0.76% 78.09% 44ms 1.02% top12 (inline) 10ms 0.23% 78.33% 42ms 0.97% AbstractCardiacCell::SetVoltage (partial-inline) 10ms 0.23% 78.56% 42ms 0.97% PetscMallocA 27ms 0.63% 79.18% 41ms 0.95% AbstractOneStepIvpOdeSolver::Solve 34ms 0.79% 79.97% 38ms 0.88% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 79.97% 38ms 0.88% CxxTest::RealWorldDescription::setUp 38ms 0.88% 80.85% 38ms 0.88% DistributedVector::Iterator::operator!= 0 0% 80.85% 38ms 0.88% PetscInitialize 0 0% 80.85% 38ms 0.88% PetscSetup::setUpWorld 0 0% 80.85% 38ms 0.88% PetscSetupUtils::CommonSetup 0 0% 80.85% 38ms 0.88% PetscSetupUtils::InitialisePetsc 0 0% 80.85% 37ms 0.86% PMPI_Init_thread 0 0% 80.85% 37ms 0.86% PetscMemcpy (inline) 2ms 0.046% 80.90% 37ms 0.86% VecCopy_Seq (partial-inline) 0 0% 80.90% 37ms 0.86% ompi_mpi_init 0 0% 80.90% 35ms 0.81% VecAXPY_Seq 2ms 0.046% 80.95% 35ms 0.81% VecCreate 2ms 0.046% 80.99% 34ms 0.79% VecDuplicate_Seq 32ms 0.74% 81.73% 33ms 0.76% __ieee754_log_fma 1ms 0.023% 81.76% 32ms 0.74% PetscMallocAlign 32ms 0.74% 82.50% 32ms 0.74% VecMAXPY_Seq 32ms 0.74% 83.24% 32ms 0.74% daxpy_ 0 0% 83.24% 31ms 0.72% VecNorm_MPI 0 0% 83.24% 31ms 0.72% VecNorm_MPI_Default.constprop.0 31ms 0.72% 83.96% 31ms 0.72% asuint64 (inline) 1ms 0.023% 83.98% 30ms 0.7% VecCreate_MPI_Private 2ms 0.046% 84.03% 29ms 0.67% 23ms 0.53% 84.56% 29ms 0.67% AbstractParameterisedSystem::SetAnyVariable 4ms 0.093% 84.65% 29ms 0.67% __GI___libc_malloc 21ms 0.49% 85.14% 28ms 0.65% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 14ms 0.32% 85.47% 28ms 0.65% TimeStepper::AdvanceOneTimeStep 25ms 0.58% 86.05% 25ms 0.58% DistributedVector::Stripe::operator[] (inline) 2ms 0.046% 86.09% 25ms 0.58% __posix_memalign 24ms 0.56% 86.65% 24ms 0.56% TimeStepper::GetNextTimeStep 10ms 0.23% 86.88% 24ms 0.56% std::__cxx11::basic_string::basic_string 0 0% 86.88% 23ms 0.53% orte_init 22ms 0.51% 87.39% 22ms 0.51% [libm.so.6] 18ms 0.42% 87.81% 22ms 0.51% _int_malloc