File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 2798ms, 88.60% of 3158ms total Dropped 387 nodes (cum <= 15.79ms) flat flat% sum% cum cum% 0 0% 0% 3151ms 99.78% __libc_start_call_main 0 0% 0% 3151ms 99.78% __libc_start_main_impl 0 0% 0% 3151ms 99.78% _start 0 0% 0% 3149ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3149ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3149ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3149ms 99.72% main 0 0% 0% 3114ms 98.61% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3114ms 98.61% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3114ms 98.61% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 3110ms 98.48% AbstractCardiacProblem::Solve 0 0% 0% 3103ms 98.26% AbstractDynamicLinearPdeSolver::Solve 6ms 0.19% 0.19% 1534ms 48.58% AbstractCardiacTissue::SolveCellSystems 0 0% 0.19% 1212ms 38.38% LinearSystem::Solve 1ms 0.032% 0.22% 1192ms 37.75% KSPSolve 2ms 0.063% 0.28% 1192ms 37.75% KSPSolve_Private 3ms 0.095% 0.38% 1175ms 37.21% KSPSolve_SYMMLQ 14ms 0.44% 0.82% 846ms 26.79% AbstractCardiacCell::ComputeExceptVoltage 20ms 0.63% 1.46% 758ms 24.00% AbstractOneStepIvpOdeSolver::InternalSolve 4ms 0.13% 1.58% 684ms 21.66% MatMult 104ms 3.29% 4.88% 672ms 21.28% MatMult_SeqAIJ 66ms 2.09% 6.97% 656ms 20.77% EulerIvpOdeSolver::CalculateNextYValue 1ms 0.032% 7.00% 605ms 19.16% PCApply 1ms 0.032% 7.03% 598ms 18.94% PCApply_BJacobi_Singleblock 209ms 6.62% 13.65% 582ms 18.43% CellLuoRudy1991FromCellML::EvaluateYDerivatives 565ms 17.89% 31.54% 570ms 18.05% MatMult_SeqAIJ_Inode (inline) 15ms 0.47% 32.01% 564ms 17.86% AbstractCardiacTissue::UpdateCaches (inline) 239ms 7.57% 39.58% 525ms 16.62% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.032% 39.61% 498ms 15.77% KSPSolve_PREONLY (partial-inline) 3ms 0.095% 39.71% 466ms 14.76% MatSolve 0 0% 39.71% 466ms 14.76% PCApply_ICC 458ms 14.50% 54.21% 460ms 14.57% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 54.21% 443ms 14.03% KSP_PCApply.lto_priv.18 161ms 5.10% 59.31% 440ms 13.93% __GI___exp 17ms 0.54% 59.85% 336ms 10.64% BidomainSolver::SetupLinearSystem 242ms 7.66% 67.51% 244ms 7.73% __ieee754_exp_fma 1ms 0.032% 67.54% 215ms 6.81% KSPConvergedDefault 0 0% 67.54% 212ms 6.71% KSP_PCApply (partial-inline) 0 0% 67.54% 158ms 5.00% std::pow (inline) 11ms 0.35% 67.89% 157ms 4.97% __pow 10ms 0.32% 68.21% 145ms 4.59% __ieee754_pow_fma 50ms 1.58% 69.79% 95ms 3.01% CellLuoRudy1991FromCellML::VerifyStateVariables 95ms 3.01% 72.80% 95ms 3.01% [libchaste_heart.so] 1ms 0.032% 72.83% 86ms 2.72% MatNullSpaceRemove 64ms 2.03% 74.86% 69ms 2.18% exp_inline (inline) 65ms 2.06% 76.92% 65ms 2.06% log_inline (inline) 1ms 0.032% 76.95% 56ms 1.77% VecDuplicate 1ms 0.032% 76.98% 53ms 1.68% VecMDot 10ms 0.32% 77.30% 52ms 1.65% VecMXDot_Private 15ms 0.47% 77.77% 50ms 1.58% MPI_Wtime 8ms 0.25% 78.02% 41ms 1.30% PetscLogEventBeginDefault 39ms 1.23% 79.26% 39ms 1.23% ddot_ 36ms 1.14% 80.40% 36ms 1.14% [libm.so.6] 33ms 1.04% 81.44% 35ms 1.11% VecMDot_Seq 2ms 0.063% 81.51% 35ms 1.11% __GI___clock_gettime 33ms 1.04% 82.55% 33ms 1.04% [[vdso]] 2ms 0.063% 82.62% 32ms 1.01% VecDestroy 1ms 0.032% 82.65% 32ms 1.01% VecMAXPY 0 0% 82.65% 31ms 0.98% 0 0% 82.65% 31ms 0.98% CxxTest::RealWorldDescription::setUp 0 0% 82.65% 31ms 0.98% PMPI_Init_thread 0 0% 82.65% 31ms 0.98% PetscInitialize 0 0% 82.65% 31ms 0.98% PetscSetup::setUpWorld 0 0% 82.65% 31ms 0.98% PetscSetupUtils::CommonSetup 0 0% 82.65% 31ms 0.98% PetscSetupUtils::InitialisePetsc 10ms 0.32% 82.96% 31ms 0.98% TimeStepper::AdvanceOneTimeStep 31ms 0.98% 83.95% 31ms 0.98% TimeStepper::CalculateNextTime 0 0% 83.95% 31ms 0.98% ompi_mpi_init 1ms 0.032% 83.98% 30ms 0.95% VecDuplicate_Seq 0 0% 83.98% 30ms 0.95% VecNorm 9ms 0.28% 84.26% 27ms 0.85% TimeStepper::TimeStepper 1ms 0.032% 84.29% 27ms 0.85% VecNorm_Seq 2ms 0.063% 84.36% 25ms 0.79% PetscMallocA 2ms 0.063% 84.42% 25ms 0.79% VecAXPY 1ms 0.032% 84.45% 25ms 0.79% VecCopy 1ms 0.032% 84.48% 25ms 0.79% VecDuplicate_MPI 0 0% 84.48% 24ms 0.76% VecDot 4ms 0.13% 84.61% 24ms 0.76% std::__cxx11::basic_string::basic_string 4ms 0.13% 84.74% 23ms 0.73% PetscLogEventEndDefault 1ms 0.032% 84.77% 23ms 0.73% PetscMallocAlign 22ms 0.7% 85.47% 23ms 0.73% VecMAXPY_Seq 0 0% 85.47% 22ms 0.7% orte_init 7ms 0.22% 85.69% 21ms 0.66% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.032% 85.72% 21ms 0.66% VecCreate 0 0% 85.72% 20ms 0.63% VecDot_Seq 0 0% 85.72% 20ms 0.63% VecXDot_Seq_Private.constprop.0 9ms 0.28% 86.00% 20ms 0.63% __GI___libc_malloc 20ms 0.63% 86.64% 20ms 0.63% __ieee754_log_fma 5ms 0.16% 86.80% 19ms 0.6% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 86.80% 19ms 0.6% AbstractBidomainSolver::FinaliseLinearSystem 14ms 0.44% 87.24% 18ms 0.57% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 14ms 0.44% 87.68% 18ms 0.57% AbstractOneStepIvpOdeSolver::Solve 5ms 0.16% 87.84% 18ms 0.57% PetscFreeAlign 18ms 0.57% 88.41% 18ms 0.57% __memcpy_avx512_unaligned_erms 0 0% 88.41% 17ms 0.54% hwloc_linux_get_tid_last_cpu_location 0 0% 88.41% 17ms 0.54% hwloc_topology_load 5ms 0.16% 88.57% 16ms 0.51% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 1ms 0.032% 88.60% 16ms 0.51% VecSetType