File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110632ms, 91.64% of 120725ms total Dropped 1165 nodes (cum <= 603.62ms) flat flat% sum% cum cum% 0 0% 0% 120709ms 100% __libc_start_call_main 0 0% 0% 120709ms 100% __libc_start_main_impl 0 0% 0% 120709ms 100% _start 0 0% 0% 120706ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120706ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120706ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120706ms 100% main 0 0% 0% 120669ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120669ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120669ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120669ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120669ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120669ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0025% 0.0025% 119379ms 98.89% AbstractCardiacProblem::Solve 9ms 0.0075% 0.0099% 118454ms 98.12% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0041% 0.014% 66796ms 55.33% LinearSystem::Solve 1ms 0.00083% 0.015% 66267ms 54.89% KSPSolve 11ms 0.0091% 0.024% 66266ms 54.89% KSPSolve_Private 7ms 0.0058% 0.03% 65813ms 54.51% KSPSolve_SYMMLQ 216ms 0.18% 0.21% 42760ms 35.42% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.21% 37295ms 30.89% PCApply 7ms 0.0058% 0.22% 37284ms 30.88% PCApply_BJacobi_Singleblock 3ms 0.0025% 0.22% 34643ms 28.70% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.22% 33550ms 27.79% PCApply_ICC 2ms 0.0017% 0.22% 33548ms 27.79% MatSolve 33047ms 27.37% 27.60% 33546ms 27.79% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1408ms 1.17% 28.76% 32903ms 27.25% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 4ms 0.0033% 28.77% 32132ms 26.62% KSP_PCApply.lto_priv.18 6926ms 5.74% 34.50% 28451ms 23.57% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 10ms 0.0083% 34.51% 22282ms 18.46% MatMult 3687ms 3.05% 37.56% 22272ms 18.45% MatMult_SeqAIJ (partial-inline) 18319ms 15.17% 52.74% 18798ms 15.57% MatMult_SeqAIJ_Inode (inline) 1923ms 1.59% 54.33% 14669ms 12.15% CardiacNewtonSolver::Solve 296ms 0.25% 54.58% 8984ms 7.44% AbstractCardiacTissue::UpdateCaches (inline) 4354ms 3.61% 58.18% 8621ms 7.14% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1971ms 1.63% 59.82% 8484ms 7.03% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1060ms 0.88% 60.69% 7770ms 6.44% BidomainSolver::SetupLinearSystem 1072ms 0.89% 61.58% 7300ms 6.05% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 3ms 0.0025% 61.58% 7064ms 5.85% KSP_PCApply (partial-inline) 5ms 0.0041% 61.59% 6500ms 5.38% KSPConvergedDefault 5958ms 4.94% 66.52% 5958ms 4.94% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3929ms 3.25% 69.78% 3969ms 3.29% __ieee754_log_fma 0 0% 69.78% 3709ms 3.07% boost::numeric::ublas::norm_inf (inline) 2505ms 2.07% 71.85% 3709ms 3.07% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.85% 3709ms 3.07% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.85% 3709ms 3.07% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3391ms 2.81% 74.66% 3391ms 2.81% __memcpy_avx_unaligned_erms 0 0% 74.66% 3352ms 2.78% PetscMemcpy (inline) 6ms 0.005% 74.67% 3294ms 2.73% MatNullSpaceRemove 32ms 0.027% 74.69% 3263ms 2.70% std::pow (inline) 385ms 0.32% 75.01% 3227ms 2.67% __pow 20ms 0.017% 75.03% 2887ms 2.39% VecCopy 1737ms 1.44% 76.47% 2876ms 2.38% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 6ms 0.005% 76.47% 2864ms 2.37% VecCopy_Seq (partial-inline) 395ms 0.33% 76.80% 2831ms 2.34% __ieee754_pow_fma 2823ms 2.34% 79.14% 2823ms 2.34% ddot_ 18ms 0.015% 79.15% 2590ms 2.15% VecAXPY 7ms 0.0058% 79.16% 2572ms 2.13% VecAXPY_Seq 2546ms 2.11% 81.27% 2546ms 2.11% daxpy_ 3ms 0.0025% 81.27% 2303ms 1.91% VecDot 2ms 0.0017% 81.27% 2300ms 1.91% VecDot_Seq 1ms 0.00083% 81.27% 2298ms 1.90% VecXDot_Seq_Private.constprop.0 3ms 0.0025% 81.28% 2093ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00083% 81.28% 1870ms 1.55% VecMDot 11ms 0.0091% 81.29% 1869ms 1.55% VecMXDot_Private 1845ms 1.53% 82.81% 1854ms 1.54% VecMDot_Seq 32ms 0.027% 82.84% 1715ms 1.42% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1597ms 1.32% 84.16% 1655ms 1.37% exp_inline (inline) 1498ms 1.24% 85.40% 1498ms 1.24% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.40% 1438ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 5ms 0.0041% 85.41% 1418ms 1.17% VecMAXPY 1408ms 1.17% 86.57% 1413ms 1.17% VecMAXPY_Seq 1177ms 0.97% 87.55% 1177ms 0.97% __memset_avx2_unaligned_erms 0 0% 87.55% 1174ms 0.97% PetscMemzero (inline) 0 0% 87.55% 1139ms 0.94% CuboidMeshConstructor::Construct 0 0% 87.55% 1138ms 0.94% AbstractTetrahedralMesh::ConstructRegularSlabMesh 2ms 0.0017% 87.55% 1138ms 0.94% DistributedTetrahedralMesh::ConstructCuboid 6ms 0.005% 87.56% 1131ms 0.94% boost::numeric::ublas::matrix_assign (inline) 0 0% 87.56% 1127ms 0.93% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 87.56% 1127ms 0.93% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 87.56% 1127ms 0.93% boost_numeric_ublas_abs (inline) 1127ms 0.93% 88.49% 1127ms 0.93% std::abs (inline) 208ms 0.17% 88.66% 1114ms 0.92% boost::numeric::ublas::indexing_matrix_assign 797ms 0.66% 89.32% 1047ms 0.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.0033% 89.33% 1026ms 0.85% Element::Element 1ms 0.00083% 89.33% 987ms 0.82% AbstractTetrahedralElement::CalculateJacobian 4ms 0.0033% 89.33% 954ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 2ms 0.0017% 89.33% 950ms 0.79% VecDuplicate 10ms 0.0083% 89.34% 936ms 0.78% VecScale 0 0% 89.34% 926ms 0.77% VecScale_Seq 924ms 0.77% 90.10% 924ms 0.77% dscal_ 10ms 0.0083% 90.11% 884ms 0.73% BidomainAssembler::ComputeMatrixTerm 1ms 0.00083% 90.11% 847ms 0.7% BidomainProblem::WriteOneStep 8ms 0.0066% 90.12% 845ms 0.7% boost::numeric::ublas::c_matrix::c_matrix (inline) 843ms 0.7% 90.82% 843ms 0.7% [libchaste_heart.so] 18ms 0.015% 90.83% 795ms 0.66% PetscMallocA 1ms 0.00083% 90.83% 787ms 0.65% AbstractBidomainSolver::FinaliseLinearSystem 221ms 0.18% 91.02% 784ms 0.65% AbstractBidomainSolver::CheckCompatibilityCondition 10ms 0.0083% 91.03% 777ms 0.64% PetscMallocAlign (partial-inline) 2ms 0.0017% 91.03% 756ms 0.63% VecNorm 2ms 0.0017% 91.03% 746ms 0.62% VecNorm_Seq 733ms 0.61% 91.64% 733ms 0.61% log_inline (inline) 0 0% 91.64% 655ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 4ms 0.0033% 91.64% 608ms 0.5% H5Dwrite