File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108001ms, 92.13% of 117227ms total Dropped 1134 nodes (cum <= 586.13ms) flat flat% sum% cum cum% 0 0% 0% 117208ms 100% __libc_start_call_main 0 0% 0% 117208ms 100% __libc_start_main_impl 0 0% 0% 117208ms 100% _start 0 0% 0% 117205ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 117205ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 117205ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 117205ms 100% main 0 0% 0% 117165ms 99.95% AbstractConvergenceTester::Converge 0 0% 0% 117165ms 99.95% CxxTest::RealTestDescription::run 0 0% 0% 117165ms 99.95% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 117165ms 99.95% CxxTest::TestRunner::runTest (inline) 0 0% 0% 117165ms 99.95% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 117165ms 99.95% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 7ms 0.006% 0.006% 115919ms 98.88% AbstractCardiacProblem::Solve 6ms 0.0051% 0.011% 115131ms 98.21% AbstractDynamicLinearPdeSolver::Solve 6ms 0.0051% 0.016% 63888ms 54.50% LinearSystem::Solve 2ms 0.0017% 0.018% 63409ms 54.09% KSPSolve 8ms 0.0068% 0.025% 63408ms 54.09% KSPSolve_Private 9ms 0.0077% 0.032% 63051ms 53.79% KSPSolve_SYMMLQ 210ms 0.18% 0.21% 42443ms 36.21% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.21% 35127ms 29.96% PCApply 4ms 0.0034% 0.22% 35120ms 29.96% PCApply_BJacobi_Singleblock 0 0% 0.22% 32843ms 28.02% KSPSolve_PREONLY (partial-inline) 1358ms 1.16% 1.38% 32685ms 27.88% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 1.38% 31707ms 27.05% PCApply_ICC 8ms 0.0068% 1.38% 31705ms 27.05% MatSolve 31235ms 26.64% 28.03% 31697ms 27.04% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 2ms 0.0017% 28.03% 30371ms 25.91% KSP_PCApply.lto_priv.18 6919ms 5.90% 33.93% 28180ms 24.04% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 8ms 0.0068% 33.94% 21467ms 18.31% MatMult 185ms 0.16% 34.10% 21459ms 18.31% MatMult_SeqAIJ (partial-inline) 20992ms 17.91% 52.00% 21459ms 18.31% MatMult_SeqAIJ_Inode (inline) 2043ms 1.74% 53.75% 14577ms 12.43% CardiacNewtonSolver::Solve 290ms 0.25% 53.99% 8926ms 7.61% AbstractCardiacTissue::UpdateCaches (inline) 4393ms 3.75% 57.74% 8448ms 7.21% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1940ms 1.65% 59.40% 8398ms 7.16% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1054ms 0.9% 60.30% 7543ms 6.43% BidomainSolver::SetupLinearSystem 1107ms 0.94% 61.24% 7174ms 6.12% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 61.24% 6828ms 5.82% KSP_PCApply (partial-inline) 5ms 0.0043% 61.24% 6329ms 5.40% KSPConvergedDefault 5834ms 4.98% 66.22% 5834ms 4.98% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3831ms 3.27% 69.49% 3872ms 3.30% __ieee754_log_fma 0 0% 69.49% 3671ms 3.13% boost::numeric::ublas::norm_inf (inline) 2481ms 2.12% 71.61% 3671ms 3.13% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 71.61% 3671ms 3.13% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 71.61% 3671ms 3.13% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 9ms 0.0077% 71.61% 3382ms 2.89% MatNullSpaceRemove 3178ms 2.71% 74.32% 3178ms 2.71% __memcpy_avx_unaligned_erms 0 0% 74.32% 3149ms 2.69% PetscMemcpy (inline) 3095ms 2.64% 76.96% 3095ms 2.64% ddot_ 17ms 0.015% 76.98% 3086ms 2.63% std::pow (inline) 397ms 0.34% 77.32% 3065ms 2.61% __pow 1814ms 1.55% 78.86% 2981ms 2.54% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 20ms 0.017% 78.88% 2713ms 2.31% VecCopy 2ms 0.0017% 78.88% 2691ms 2.30% VecCopy_Seq (partial-inline) 396ms 0.34% 79.22% 2655ms 2.26% __ieee754_pow_fma 5ms 0.0043% 79.23% 2566ms 2.19% VecDot 0 0% 79.23% 2561ms 2.18% VecDot_Seq 2ms 0.0017% 79.23% 2561ms 2.18% VecXDot_Seq_Private.constprop.0 12ms 0.01% 79.24% 2416ms 2.06% VecAXPY 7ms 0.006% 79.24% 2404ms 2.05% VecAXPY_Seq 2375ms 2.03% 81.27% 2375ms 2.03% daxpy_ 0 0% 81.27% 2072ms 1.77% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00085% 81.27% 1882ms 1.61% VecMDot 13ms 0.011% 81.28% 1881ms 1.60% VecMXDot_Private 1856ms 1.58% 82.86% 1866ms 1.59% VecMDot_Seq 32ms 0.027% 82.89% 1702ms 1.45% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1448ms 1.24% 84.13% 1504ms 1.28% exp_inline (inline) 5ms 0.0043% 84.13% 1491ms 1.27% VecMAXPY 1480ms 1.26% 85.39% 1486ms 1.27% VecMAXPY_Seq 1470ms 1.25% 86.65% 1470ms 1.25% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.65% 1424ms 1.21% AbstractFeAssemblerInterface::AssembleMatrix (inline) 6ms 0.0051% 86.65% 1133ms 0.97% boost::numeric::ublas::matrix_assign (inline) 202ms 0.17% 86.83% 1120ms 0.96% boost::numeric::ublas::indexing_matrix_assign 0 0% 86.83% 1102ms 0.94% CuboidMeshConstructor::Construct 0 0% 86.83% 1101ms 0.94% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00085% 86.83% 1101ms 0.94% DistributedTetrahedralMesh::ConstructCuboid 0 0% 86.83% 1094ms 0.93% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.83% 1094ms 0.93% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.83% 1094ms 0.93% boost_numeric_ublas_abs (inline) 1094ms 0.93% 87.76% 1094ms 0.93% std::abs (inline) 794ms 0.68% 88.44% 1045ms 0.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.44% 980ms 0.84% Element::Element 3ms 0.0026% 88.44% 972ms 0.83% AbstractTetrahedralElement::CalculateJacobian 0 0% 88.44% 946ms 0.81% AbstractBidomainSolver::FinaliseLinearSystem 274ms 0.23% 88.67% 942ms 0.8% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.00085% 88.67% 932ms 0.8% AbstractTetrahedralElement::AbstractTetrahedralElement 2ms 0.0017% 88.68% 927ms 0.79% VecScale 2ms 0.0017% 88.68% 925ms 0.79% VecScale_Seq 921ms 0.79% 89.46% 921ms 0.79% dscal_ 890ms 0.76% 90.22% 890ms 0.76% __memset_avx2_unaligned_erms 0 0% 90.22% 881ms 0.75% PetscMemzero (inline) 4ms 0.0034% 90.23% 880ms 0.75% BidomainAssembler::ComputeMatrixTerm 9ms 0.0077% 90.23% 868ms 0.74% boost::numeric::ublas::c_matrix::c_matrix (inline) 863ms 0.74% 90.97% 863ms 0.74% [libchaste_heart.so] 4ms 0.0034% 90.97% 795ms 0.68% VecDuplicate 2ms 0.0017% 90.97% 770ms 0.66% VecNorm 4ms 0.0034% 90.98% 759ms 0.65% VecNorm_Seq 0 0% 90.98% 722ms 0.62% BidomainProblem::WriteOneStep 713ms 0.61% 91.59% 713ms 0.61% log_inline (inline) 10ms 0.0085% 91.59% 663ms 0.57% PetscMallocA 10ms 0.0085% 91.60% 653ms 0.56% PetscMallocAlign (partial-inline) 0 0% 91.60% 648ms 0.55% AbstractFeAssemblerInterface::Assemble (inline) 617ms 0.53% 92.13% 617ms 0.53% DistributedVector::Iterator::operator!=