File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3684ms, 86.70% of 4249ms total Dropped 493 nodes (cum <= 21.25ms) flat flat% sum% cum cum% 0 0% 0% 4240ms 99.79% __libc_start_call_main 0 0% 0% 4240ms 99.79% __libc_start_main_impl 0 0% 0% 4240ms 99.79% _start 0 0% 0% 4237ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4237ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4237ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4237ms 99.72% main 0 0% 0% 4194ms 98.71% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4194ms 98.71% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4194ms 98.71% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 2ms 0.047% 0.047% 4185ms 98.49% AbstractCardiacProblem::Solve 1ms 0.024% 0.071% 4173ms 98.21% AbstractDynamicLinearPdeSolver::Solve 20ms 0.47% 0.54% 2182ms 51.35% AbstractCardiacTissue::SolveCellSystems 0 0% 0.54% 1534ms 36.10% LinearSystem::Solve 1ms 0.024% 0.56% 1480ms 34.83% KSPSolve 11ms 0.26% 0.82% 1479ms 34.81% KSPSolve_Private 44ms 1.04% 1.86% 1446ms 34.03% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.047% 1.91% 1434ms 33.75% KSPSolve_CG 253ms 5.95% 7.86% 1306ms 30.74% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.071% 7.93% 881ms 20.73% PCApply 1ms 0.024% 7.95% 866ms 20.38% PCApply_BJacobi_Singleblock 0 0% 7.95% 717ms 16.87% KSPSolve_PREONLY (partial-inline) 0 0% 7.95% 692ms 16.29% KSP_PCApply.lto_priv.7 3ms 0.071% 8.03% 671ms 15.79% MatSolve 0 0% 8.03% 671ms 15.79% PCApply_ICC 658ms 15.49% 23.51% 664ms 15.63% MatSolve_SeqSBAIJ_1_NaturalOrdering 15ms 0.35% 23.86% 647ms 15.23% AbstractCardiacTissue::UpdateCaches (inline) 76ms 1.79% 25.65% 646ms 15.20% CardiacNewtonSolver::Solve 164ms 3.86% 29.51% 593ms 13.96% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 2ms 0.047% 29.56% 537ms 12.64% MatMult 11ms 0.26% 29.82% 525ms 12.36% MatMult_SeqAIJ (partial-inline) 513ms 12.07% 41.89% 525ms 12.36% MatMult_SeqAIJ_Inode (inline) 209ms 4.92% 46.81% 392ms 9.23% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 74ms 1.74% 48.55% 390ms 9.18% BidomainSolver::SetupLinearSystem 89ms 2.09% 50.65% 355ms 8.35% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 50.65% 259ms 6.10% KSP_PCApply (partial-inline) 2ms 0.047% 50.69% 258ms 6.07% KSPConvergedDefault 253ms 5.95% 56.65% 253ms 5.95% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 30ms 0.71% 57.35% 222ms 5.22% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 57.35% 190ms 4.47% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 40ms 0.94% 58.30% 190ms 4.47% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 183ms 4.31% 62.60% 186ms 4.38% __ieee754_log_fma 24ms 0.56% 63.17% 179ms 4.21% __pow 0 0% 63.17% 179ms 4.21% std::pow (inline) 0 0% 63.17% 158ms 3.72% boost::numeric::ublas::norm_inf (inline) 108ms 2.54% 65.71% 158ms 3.72% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 65.71% 158ms 3.72% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 65.71% 158ms 3.72% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 18ms 0.42% 66.13% 153ms 3.60% __ieee754_pow_fma 1ms 0.024% 66.16% 128ms 3.01% MatNullSpaceRemove 56ms 1.32% 67.47% 110ms 2.59% __GI___exp 97ms 2.28% 69.76% 97ms 2.28% ddot_ 92ms 2.17% 71.92% 94ms 2.21% exp_inline (inline) 61ms 1.44% 73.36% 92ms 2.17% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 33ms 0.78% 74.14% 91ms 2.14% MPI_Wtime 0 0% 74.14% 88ms 2.07% VecDuplicate 0 0% 74.14% 84ms 1.98% VecMDot 3ms 0.071% 74.21% 84ms 1.98% VecMXDot_Private 0 0% 74.21% 71ms 1.67% VecNorm 1ms 0.024% 74.23% 65ms 1.53% VecTDot 60ms 1.41% 75.64% 62ms 1.46% VecMDot_Seq 1ms 0.024% 75.66% 62ms 1.46% VecNorm_Seq 61ms 1.44% 77.10% 61ms 1.44% [libchaste_heart.so] 0 0% 77.10% 58ms 1.37% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.024% 77.12% 58ms 1.37% __GI___clock_gettime 18ms 0.42% 77.55% 57ms 1.34% AbstractBidomainSolver::CheckCompatibilityCondition 7ms 0.16% 77.71% 57ms 1.34% PetscLogEventEndDefault 57ms 1.34% 79.05% 57ms 1.34% [[vdso]] 0 0% 79.05% 54ms 1.27% VecTDot_Seq 1ms 0.024% 79.08% 54ms 1.27% VecXDot_Seq_Private.constprop.0 9ms 0.21% 79.29% 53ms 1.25% PetscLogEventBeginDefault 2ms 0.047% 79.34% 50ms 1.18% VecDuplicate_MPI 0 0% 79.34% 50ms 1.18% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 79.34% 50ms 1.18% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 79.34% 50ms 1.18% boost_numeric_ublas_abs (inline) 50ms 1.18% 80.51% 50ms 1.18% std::abs (inline) 46ms 1.08% 81.60% 46ms 1.08% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 8ms 0.19% 81.78% 44ms 1.04% PetscMallocA 2ms 0.047% 81.83% 43ms 1.01% VecMAXPY 40ms 0.94% 82.77% 40ms 0.94% log_inline (inline) 0 0% 82.77% 39ms 0.92% CxxTest::RealWorldDescription::setUp 1ms 0.024% 82.80% 39ms 0.92% PetscInitialize 0 0% 82.80% 39ms 0.92% PetscSetup::setUpWorld 0 0% 82.80% 39ms 0.92% PetscSetupUtils::CommonSetup 0 0% 82.80% 39ms 0.92% PetscSetupUtils::InitialisePetsc 29ms 0.68% 83.48% 39ms 0.92% __ieee754_exp_fma 0 0% 83.48% 38ms 0.89% PMPI_Init_thread 0 0% 83.48% 38ms 0.89% VecDuplicate_Seq 0 0% 83.48% 38ms 0.89% ompi_mpi_init 3ms 0.071% 83.55% 36ms 0.85% PetscMallocAlign 1ms 0.024% 83.57% 36ms 0.85% VecCreate 10ms 0.24% 83.81% 34ms 0.8% AbstractCardiacCell::SetVoltage 34ms 0.8% 84.61% 34ms 0.8% DistributedVector::Iterator::operator!= 4ms 0.094% 84.70% 34ms 0.8% VecCopy 0 0% 84.70% 33ms 0.78% 3ms 0.071% 84.77% 31ms 0.73% VecCreate_MPI_Private 29ms 0.68% 85.46% 29ms 0.68% DistributedVector::Stripe::operator[] (inline) 0 0% 85.46% 27ms 0.64% VecNorm_MPI 0 0% 85.46% 27ms 0.64% VecNorm_MPI_Default.constprop.0 1ms 0.024% 85.48% 25ms 0.59% VecDestroy 23ms 0.54% 86.02% 24ms 0.56% VecMAXPY_Seq 7ms 0.16% 86.18% 23ms 0.54% __GI___libc_malloc 0 0% 86.18% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 86.18% 22ms 0.52% PetscMemcpy (inline) 22ms 0.52% 86.70% 22ms 0.52% [libm.so.6] 0 0% 86.70% 22ms 0.52% orte_init