File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3734ms, 86.74% of 4305ms total Dropped 479 nodes (cum <= 21.52ms) flat flat% sum% cum cum% 0 0% 0% 4298ms 99.84% __libc_start_call_main 0 0% 0% 4298ms 99.84% __libc_start_main_impl 0 0% 0% 4298ms 99.84% _start 0 0% 0% 4295ms 99.77% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4295ms 99.77% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4295ms 99.77% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4295ms 99.77% main 0 0% 0% 4258ms 98.91% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4258ms 98.91% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4258ms 98.91% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.023% 0.023% 4253ms 98.79% AbstractCardiacProblem::Solve 0 0% 0.023% 4234ms 98.35% AbstractDynamicLinearPdeSolver::Solve 28ms 0.65% 0.67% 2252ms 52.31% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.7% 1613ms 37.47% LinearSystem::Solve 1ms 0.023% 0.72% 1562ms 36.28% KSPSolve 4ms 0.093% 0.81% 1561ms 36.26% KSPSolve_Private 2ms 0.046% 0.86% 1496ms 34.75% KSPSolve_SYMMLQ 33ms 0.77% 1.63% 1258ms 29.22% AbstractCardiacCell::ComputeExceptVoltage 40ms 0.93% 2.56% 1086ms 25.23% AbstractOneStepIvpOdeSolver::InternalSolve 3ms 0.07% 2.62% 956ms 22.21% PCApply 0 0% 2.62% 951ms 22.09% PCApply_BJacobi_Singleblock 58ms 1.35% 3.97% 903ms 20.98% EulerIvpOdeSolver::CalculateNextYValue 231ms 5.37% 9.34% 833ms 19.35% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 9.34% 823ms 19.12% KSPSolve_PREONLY (partial-inline) 26ms 0.6% 9.94% 795ms 18.47% AbstractCardiacTissue::UpdateCaches (inline) 345ms 8.01% 17.96% 767ms 17.82% __GI___exp 1ms 0.023% 17.98% 766ms 17.79% PCApply_ICC 4ms 0.093% 18.07% 765ms 17.77% MatSolve 739ms 17.17% 35.24% 747ms 17.35% MatSolve_SeqSBAIJ_1_NaturalOrdering 236ms 5.48% 40.72% 730ms 16.96% CellLuoRudy1991FromCellML::GetIIonic 0 0% 40.72% 717ms 16.66% KSP_PCApply.lto_priv.18 4ms 0.093% 40.81% 465ms 10.80% MatMult 12ms 0.28% 41.09% 453ms 10.52% MatMult_SeqAIJ (partial-inline) 435ms 10.10% 51.20% 453ms 10.52% MatMult_SeqAIJ_Inode (inline) 348ms 8.08% 59.28% 403ms 9.36% __ieee754_exp_fma 73ms 1.70% 60.98% 318ms 7.39% BidomainSolver::SetupLinearSystem 0 0% 60.98% 308ms 7.15% KSP_PCApply (partial-inline) 0 0% 60.98% 305ms 7.08% KSPConvergedDefault 0 0% 60.98% 251ms 5.83% std::pow (inline) 32ms 0.74% 61.72% 250ms 5.81% __pow 22ms 0.51% 62.23% 218ms 5.06% __ieee754_pow_fma 0 0% 62.23% 125ms 2.90% MatNullSpaceRemove 59ms 1.37% 63.60% 115ms 2.67% CellLuoRudy1991FromCellML::VerifyStateVariables 110ms 2.56% 66.16% 110ms 2.56% log_inline (inline) 23ms 0.53% 66.69% 102ms 2.37% MPI_Wtime 1ms 0.023% 66.71% 85ms 1.97% VecDuplicate 0 0% 66.71% 79ms 1.84% VecMDot 7ms 0.16% 66.88% 79ms 1.84% VecMXDot_Private 2ms 0.046% 66.92% 79ms 1.84% __GI___clock_gettime 77ms 1.79% 68.71% 77ms 1.79% [[vdso]] 71ms 1.65% 70.36% 73ms 1.70% exp_inline (inline) 6ms 0.14% 70.50% 63ms 1.46% PetscLogEventBeginDefault 61ms 1.42% 71.92% 61ms 1.42% ddot_ 20ms 0.46% 72.38% 59ms 1.37% TimeStepper::TimeStepper 58ms 1.35% 73.73% 58ms 1.35% VecMDot_Seq 7ms 0.16% 73.89% 57ms 1.32% AbstractCardiacCell::SetVoltage (partial-inline) 57ms 1.32% 75.21% 57ms 1.32% [libchaste_heart.so] 8ms 0.19% 75.40% 56ms 1.30% PetscLogEventEndDefault 41ms 0.95% 76.35% 53ms 1.23% top12 (inline) 1ms 0.023% 76.38% 49ms 1.14% VecDestroy 7ms 0.16% 76.54% 48ms 1.11% VecCopy 1ms 0.023% 76.56% 48ms 1.11% VecDuplicate_MPI 0 0% 76.56% 47ms 1.09% VecDot 2ms 0.046% 76.61% 46ms 1.07% VecMAXPY 2ms 0.046% 76.66% 46ms 1.07% VecNorm 40ms 0.93% 77.58% 45ms 1.05% AbstractParameterisedSystem::SetAnyVariable 45ms 1.05% 78.63% 45ms 1.05% TimeStepper::CalculateNextTime 1ms 0.023% 78.65% 43ms 1% AbstractBidomainSolver::FinaliseLinearSystem 11ms 0.26% 78.91% 41ms 0.95% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.91% 41ms 0.95% VecDot_Seq 0 0% 78.91% 41ms 0.95% VecXDot_Seq_Private.constprop.0 5ms 0.12% 79.02% 40ms 0.93% PetscMallocA 22ms 0.51% 79.54% 38ms 0.88% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 38ms 0.88% 80.42% 38ms 0.88% __memcpy_avx_unaligned_erms 3ms 0.07% 80.49% 37ms 0.86% VecAXPY 20ms 0.46% 80.95% 36ms 0.84% TimeStepper::AdvanceOneTimeStep 2ms 0.046% 81.00% 36ms 0.84% VecDuplicate_Seq 0 0% 81.00% 36ms 0.84% VecNorm_Seq 35ms 0.81% 81.81% 36ms 0.84% __ieee754_log_fma 3ms 0.07% 81.88% 35ms 0.81% PetscMallocAlign (partial-inline) 1ms 0.023% 81.90% 34ms 0.79% VecCreate 29ms 0.67% 82.58% 33ms 0.77% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 82.58% 33ms 0.77% CxxTest::RealWorldDescription::setUp 0 0% 82.58% 33ms 0.77% PetscInitialize 0 0% 82.58% 33ms 0.77% PetscSetup::setUpWorld 0 0% 82.58% 33ms 0.77% PetscSetupUtils::CommonSetup 0 0% 82.58% 33ms 0.77% PetscSetupUtils::InitialisePetsc 0 0% 82.58% 32ms 0.74% PMPI_Init_thread 2ms 0.046% 82.62% 32ms 0.74% VecCreate_MPI_Private 0 0% 82.62% 32ms 0.74% ompi_mpi_init 27ms 0.63% 83.25% 31ms 0.72% VecMAXPY_Seq 30ms 0.7% 83.95% 30ms 0.7% asuint64 (inline) 0 0% 83.95% 29ms 0.67% VecNorm_MPI 1ms 0.023% 83.97% 29ms 0.67% VecNorm_MPI_Default.constprop.0 28ms 0.65% 84.62% 28ms 0.65% DistributedVector::Iterator::operator!= 0 0% 84.62% 28ms 0.65% PetscMemcpy (inline) 1ms 0.023% 84.65% 26ms 0.6% 26ms 0.6% 85.25% 26ms 0.6% std::isinf (inline) 18ms 0.42% 85.67% 24ms 0.56% AbstractOneStepIvpOdeSolver::Solve 24ms 0.56% 86.23% 24ms 0.56% __memset_avx2_unaligned_erms 0 0% 86.23% 23ms 0.53% PetscMemzero (inline) 0 0% 86.23% 23ms 0.53% VecCopy_Seq (partial-inline) 0 0% 86.23% 23ms 0.53% orte_init 22ms 0.51% 86.74% 22ms 0.51% RegularStimulus::GetStimulus