File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12586ms, 85.59% of 14705ms total Dropped 744 nodes (cum <= 73.53ms) flat flat% sum% cum cum% 0 0% 0% 14696ms 99.94% __libc_start_call_main 0 0% 0% 14696ms 99.94% __libc_start_main_impl 0 0% 0% 14696ms 99.94% _start 0 0% 0% 14693ms 99.92% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14693ms 99.92% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14693ms 99.92% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14693ms 99.92% main 0 0% 0% 14653ms 99.65% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14653ms 99.65% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14653ms 99.65% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 3ms 0.02% 0.02% 14630ms 99.49% AbstractCardiacProblem::Solve 5ms 0.034% 0.054% 11280ms 76.71% AbstractDynamicLinearPdeSolver::Solve 55ms 0.37% 0.43% 8870ms 60.32% AbstractCardiacTissue::SolveCellSystems 79ms 0.54% 0.97% 5438ms 36.98% AbstractCardiacCell::ComputeExceptVoltage 110ms 0.75% 1.71% 4780ms 32.51% AbstractOneStepIvpOdeSolver::InternalSolve 166ms 1.13% 2.84% 4078ms 27.73% EulerIvpOdeSolver::CalculateNextYValue 865ms 5.88% 8.72% 3872ms 26.33% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1711ms 11.64% 20.36% 3578ms 24.33% __GI___exp 1ms 0.0068% 20.37% 3287ms 22.35% MonodomainProblem::WriteOneStep 2ms 0.014% 20.38% 3123ms 21.24% Hdf5DataWriter::PutVector 0 0% 20.38% 3111ms 21.16% H5Dwrite 2ms 0.014% 20.39% 3086ms 20.99% H5D__write 103ms 0.7% 21.09% 2751ms 18.71% AbstractCardiacTissue::UpdateCaches (inline) 781ms 5.31% 26.41% 2576ms 17.52% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.0068% 26.41% 1944ms 13.22% H5D__chunk_collective_write 16ms 0.11% 26.52% 1943ms 13.21% H5F_set_coll_metadata_reads 1467ms 9.98% 36.50% 1791ms 12.18% __ieee754_exp_fma 11ms 0.075% 36.57% 1742ms 11.85% H5FD_s3comms_uriencode 0 0% 36.57% 1634ms 11.11% LinearSystem::Solve 0 0% 36.57% 1520ms 10.34% KSPSolve 1ms 0.0068% 36.58% 1520ms 10.34% KSPSolve_Private 3ms 0.02% 36.60% 1508ms 10.26% KSPSolve_CG 4ms 0.027% 36.63% 1414ms 9.62% H5F_block_write 3ms 0.02% 36.65% 1410ms 9.59% H5PB_write 44ms 0.3% 36.95% 1408ms 9.57% 1ms 0.0068% 36.95% 1407ms 9.57% H5FD_write 0 0% 36.95% 1407ms 9.57% H5F__accum_write 2ms 0.014% 36.97% 1300ms 8.84% H5D__mpio_select_write 0 0% 36.97% 1187ms 8.07% PMPI_File_write_at_all 1166ms 7.93% 44.90% 1171ms 7.96% __GI_pwritev64 7ms 0.048% 44.94% 1011ms 6.88% H5D__chunk_cacheable 6ms 0.041% 44.98% 930ms 6.32% std::pow (inline) 88ms 0.6% 45.58% 923ms 6.28% __pow 0 0% 45.58% 899ms 6.11% PCApply 0 0% 45.58% 895ms 6.09% PCApply_BJacobi_Singleblock 259ms 1.76% 47.34% 864ms 5.88% H5S_select_iterate 0 0% 47.34% 853ms 5.80% KSPSolve_PREONLY 2ms 0.014% 47.36% 847ms 5.76% PCApply_ICC 1ms 0.0068% 47.36% 845ms 5.75% MatSolve 830ms 5.64% 53.01% 844ms 5.74% MatSolve_SeqSBAIJ_1_NaturalOrdering 74ms 0.5% 53.51% 835ms 5.68% __ieee754_pow_fma 363ms 2.47% 55.98% 753ms 5.12% MonodomainSolver::SetupLinearSystem 65ms 0.44% 56.42% 617ms 4.20% H5D__chunk_set_sizes 1ms 0.0068% 56.43% 590ms 4.01% KSP_PCApply.lto_priv.7 1ms 0.0068% 56.44% 496ms 3.37% MatMult 491ms 3.34% 59.78% 495ms 3.37% MatMult_SeqAIJ 72ms 0.49% 60.27% 439ms 2.99% H5S_mpio_space_type 230ms 1.56% 61.83% 430ms 2.92% CellLuoRudy1991FromCellML::VerifyStateVariables 421ms 2.86% 64.69% 421ms 2.86% log_inline (inline) 4ms 0.027% 64.72% 387ms 2.63% KSPConvergedDefault 0 0% 64.72% 314ms 2.14% KSP_PCApply 302ms 2.05% 66.77% 308ms 2.09% exp_inline (inline) 113ms 0.77% 67.54% 288ms 1.96% TimeStepper::TimeStepper 241ms 1.64% 69.18% 241ms 1.64% [libchaste_heart.so] 186ms 1.26% 70.45% 235ms 1.60% top12 (inline) 11ms 0.075% 70.52% 201ms 1.37% H5VM_chunk_index 195ms 1.33% 71.85% 195ms 1.33% ddot_ 37ms 0.25% 72.10% 190ms 1.29% __GI___libc_malloc 10ms 0.068% 72.17% 182ms 1.24% ompi_datatype_destroy 30ms 0.2% 72.37% 179ms 1.22% __GI___libc_free 6ms 0.041% 72.41% 178ms 1.21% MPI_Type_free 135ms 0.92% 73.33% 178ms 1.21% _int_malloc 39ms 0.27% 73.59% 176ms 1.20% AbstractCardiacCell::SetVoltage (partial-inline) 176ms 1.20% 74.79% 176ms 1.20% asuint64 (inline) 174ms 1.18% 75.97% 174ms 1.18% TimeStepper::CalculateNextTime 125ms 0.85% 76.82% 165ms 1.12% AbstractOneStepIvpOdeSolver::Solve 2ms 0.014% 76.84% 163ms 1.11% Hdf5DataWriter::PutUnlimitedVariable 9ms 0.061% 76.90% 161ms 1.09% ompi_datatype_create 36ms 0.24% 77.14% 159ms 1.08% ompi_datatype_release_args 2ms 0.014% 77.16% 159ms 1.08% ompi_info_register_framework_params 58ms 0.39% 77.55% 149ms 1.01% _int_free 54ms 0.37% 77.92% 138ms 0.94% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 5ms 0.034% 77.95% 126ms 0.86% PMPI_File_set_view 23ms 0.16% 78.11% 124ms 0.84% H5S_set_version 1ms 0.0068% 78.12% 123ms 0.84% VecNorm 105ms 0.71% 78.83% 121ms 0.82% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 95ms 0.65% 79.48% 119ms 0.81% AbstractParameterisedSystem::SetAnyVariable 50ms 0.34% 79.82% 119ms 0.81% H5S_hyper_add_span_element 2ms 0.014% 79.83% 115ms 0.78% VecTDot 115ms 0.78% 80.61% 115ms 0.78% __memcpy_avx_unaligned_erms 0 0% 80.61% 113ms 0.77% VecNorm_Seq 0 0% 80.61% 113ms 0.77% VecTDot_Seq 2ms 0.014% 80.63% 113ms 0.77% VecXDot_Seq_Private.constprop.0 86ms 0.58% 81.21% 106ms 0.72% AbstractParameterisedSystem::GetAnyVariable 105ms 0.71% 81.92% 105ms 0.71% H5VM_chunk_index_scaled 44ms 0.3% 82.22% 101ms 0.69% H5VM_array_calc 3ms 0.02% 82.24% 97ms 0.66% H5D__chunk_allocated 96ms 0.65% 82.90% 96ms 0.65% __ieee754_log_fma 0 0% 82.90% 93ms 0.63% H5D__select_write 1ms 0.0068% 82.90% 93ms 0.63% H5Dgather 3ms 0.02% 82.92% 92ms 0.63% H5D__contig_fill 3ms 0.02% 82.94% 91ms 0.62% ompi_datatype_duplicate 0 0% 82.94% 90ms 0.61% VecDuplicate 5ms 0.034% 82.98% 90ms 0.61% VecDuplicate_MPI 3ms 0.02% 83.00% 89ms 0.61% H5VM_opvv 88ms 0.6% 83.60% 88ms 0.6% H5VM_array_offset_pre 0 0% 83.60% 88ms 0.6% PMPI_Type_create_resized 0 0% 83.60% 86ms 0.58% H5D__contig_write 36ms 0.24% 83.84% 81ms 0.55% AbstractCardiacCell::GetVoltage (partial-inline) 1ms 0.0068% 83.85% 80ms 0.54% H5Pcreate 0 0% 83.85% 80ms 0.54% std::vector::_M_assign_aux (inline) 0 0% 83.85% 80ms 0.54% std::vector::assign (inline) 47ms 0.32% 84.17% 79ms 0.54% TimeStepper::AdvanceOneTimeStep 3ms 0.02% 84.19% 78ms 0.53% opal_datatype_create_desc 47ms 0.32% 84.51% 78ms 0.53% std::__cxx11::basic_string::basic_string 8ms 0.054% 84.56% 76ms 0.52% H5P_create_id 0 0% 84.56% 76ms 0.52% PMPI_File_write_at 76ms 0.52% 85.08% 76ms 0.52% [libm.so.6] 75ms 0.51% 85.59% 75ms 0.51% TimeStepper::GetNextTimeStep