File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3683ms, 86.11% of 4277ms total Dropped 486 nodes (cum <= 21.39ms) flat flat% sum% cum cum% 0 0% 0% 4268ms 99.79% __libc_start_call_main 0 0% 0% 4268ms 99.79% __libc_start_main_impl 0 0% 0% 4268ms 99.79% _start 0 0% 0% 4264ms 99.70% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4264ms 99.70% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4264ms 99.70% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4264ms 99.70% main 0 0% 0% 4219ms 98.64% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4219ms 98.64% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4219ms 98.64% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4213ms 98.50% AbstractCardiacProblem::Solve 2ms 0.047% 0.094% 4202ms 98.25% AbstractDynamicLinearPdeSolver::Solve 21ms 0.49% 0.58% 2546ms 59.53% AbstractCardiacTissue::SolveCellSystems 25ms 0.58% 1.17% 1405ms 32.85% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.17% 1226ms 28.66% LinearSystem::Solve 30ms 0.7% 1.87% 1197ms 27.99% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 1.87% 1173ms 27.43% KSPSolve 6ms 0.14% 2.01% 1173ms 27.43% KSPSolve_Private 1ms 0.023% 2.03% 1135ms 26.54% KSPSolve_SYMMLQ 52ms 1.22% 3.25% 1001ms 23.40% EulerIvpOdeSolver::CalculateNextYValue 28ms 0.65% 3.90% 929ms 21.72% AbstractCardiacTissue::UpdateCaches (inline) 248ms 5.80% 9.70% 929ms 21.72% CellLuoRudy1991FromCellML::EvaluateYDerivatives 288ms 6.73% 16.44% 857ms 20.04% CellLuoRudy1991FromCellML::GetIIonic 403ms 9.42% 25.86% 856ms 20.01% __GI___exp 0 0% 25.86% 704ms 16.46% PCApply 0 0% 25.86% 695ms 16.25% PCApply_BJacobi_Singleblock 0 0% 25.86% 574ms 13.42% KSPSolve_PREONLY (partial-inline) 0 0% 25.86% 569ms 13.30% KSP_PCApply.lto_priv.18 4ms 0.094% 25.95% 534ms 12.49% MatSolve 0 0% 25.95% 534ms 12.49% PCApply_ICC 520ms 12.16% 38.11% 524ms 12.25% MatSolve_SeqSBAIJ_1_NaturalOrdering 3ms 0.07% 38.18% 434ms 10.15% MatMult 8ms 0.19% 38.37% 425ms 9.94% MatMult_SeqAIJ (partial-inline) 414ms 9.68% 48.05% 424ms 9.91% MatMult_SeqAIJ_Inode (inline) 357ms 8.35% 56.39% 422ms 9.87% __ieee754_exp_fma 71ms 1.66% 58.05% 377ms 8.81% BidomainSolver::SetupLinearSystem 1ms 0.023% 58.08% 312ms 7.29% std::pow (inline) 30ms 0.7% 58.78% 311ms 7.27% __pow 36ms 0.84% 59.62% 281ms 6.57% __ieee754_pow_fma 0 0% 59.62% 200ms 4.68% KSP_PCApply (partial-inline) 0 0% 59.62% 192ms 4.49% KSPConvergedDefault 136ms 3.18% 62.80% 136ms 3.18% log_inline (inline) 63ms 1.47% 64.27% 125ms 2.92% CellLuoRudy1991FromCellML::VerifyStateVariables 101ms 2.36% 66.64% 102ms 2.38% exp_inline (inline) 1ms 0.023% 66.66% 99ms 2.31% MatNullSpaceRemove 39ms 0.91% 67.57% 90ms 2.10% TimeStepper::TimeStepper 0 0% 67.57% 78ms 1.82% VecDuplicate 19ms 0.44% 68.01% 77ms 1.80% MPI_Wtime 68ms 1.59% 69.60% 68ms 1.59% [libchaste_heart.so] 18ms 0.42% 70.03% 61ms 1.43% AbstractCardiacCell::SetVoltage (partial-inline) 16ms 0.37% 70.40% 59ms 1.38% PetscLogEventEndDefault 8ms 0.19% 70.59% 59ms 1.38% VecCopy 1ms 0.023% 70.61% 58ms 1.36% __GI___clock_gettime 0 0% 70.61% 57ms 1.33% VecMDot 1ms 0.023% 70.63% 57ms 1.33% VecMXDot_Private 57ms 1.33% 71.97% 57ms 1.33% [[vdso]] 12ms 0.28% 72.25% 56ms 1.31% PetscLogEventBeginDefault 40ms 0.94% 73.18% 55ms 1.29% AbstractOneStepIvpOdeSolver::Solve 51ms 1.19% 74.37% 51ms 1.19% ddot_ 43ms 1.01% 75.38% 51ms 1.19% top12 (inline) 50ms 1.17% 76.55% 50ms 1.17% TimeStepper::CalculateNextTime 41ms 0.96% 77.51% 49ms 1.15% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 77.51% 47ms 1.10% VecDot 44ms 1.03% 78.54% 44ms 1.03% __memcpy_avx_unaligned_erms 10ms 0.23% 78.77% 43ms 1.01% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.77% 43ms 1.01% AbstractBidomainSolver::FinaliseLinearSystem 2ms 0.047% 78.82% 43ms 1.01% VecDuplicate_MPI 41ms 0.96% 79.78% 43ms 1.01% VecMDot_Seq 0 0% 79.78% 41ms 0.96% VecMAXPY 0 0% 79.78% 40ms 0.94% CxxTest::RealWorldDescription::setUp 0 0% 79.78% 40ms 0.94% PetscInitialize 0 0% 79.78% 40ms 0.94% PetscSetup::setUpWorld 0 0% 79.78% 40ms 0.94% PetscSetupUtils::CommonSetup 0 0% 79.78% 40ms 0.94% PetscSetupUtils::InitialisePetsc 0 0% 79.78% 39ms 0.91% PMPI_Init_thread 1ms 0.023% 79.80% 39ms 0.91% VecAXPY 0 0% 79.80% 39ms 0.91% VecDot_Seq 0 0% 79.80% 39ms 0.91% VecXDot_Seq_Private.constprop.0 0 0% 79.80% 39ms 0.91% ompi_mpi_init 32ms 0.75% 80.55% 38ms 0.89% AbstractParameterisedSystem::SetAnyVariable 0 0% 80.55% 36ms 0.84% VecCreate 4ms 0.094% 80.64% 36ms 0.84% VecNorm 16ms 0.37% 81.01% 35ms 0.82% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 81.01% 35ms 0.82% VecDuplicate_Seq 34ms 0.79% 81.81% 35ms 0.82% __ieee754_log_fma 2ms 0.047% 81.86% 34ms 0.79% 0 0% 81.86% 34ms 0.79% PetscMemcpy (inline) 31ms 0.72% 82.58% 31ms 0.72% [libm.so.6] 31ms 0.72% 83.31% 31ms 0.72% asuint64 (inline) 3ms 0.07% 83.38% 30ms 0.7% PetscMallocA 29ms 0.68% 84.05% 29ms 0.68% DistributedVector::Iterator::operator!= 1ms 0.023% 84.08% 29ms 0.68% VecCopy_Seq (partial-inline) 28ms 0.65% 84.73% 29ms 0.68% VecMAXPY_Seq 0 0% 84.73% 29ms 0.68% VecNorm_Seq 17ms 0.4% 85.13% 29ms 0.68% std::__cxx11::basic_string::basic_string 0 0% 85.13% 27ms 0.63% PetscMallocAlign 19ms 0.44% 85.57% 25ms 0.58% AbstractParameterisedSystem::GetAnyVariable 0 0% 85.57% 25ms 0.58% orte_init 23ms 0.54% 86.11% 23ms 0.54% RegularStimulus::GetStimulus 0 0% 86.11% 23ms 0.54% VecAXPY_Seq 0 0% 86.11% 23ms 0.54% VecDestroy 0 0% 86.11% 23ms 0.54% VecNorm_MPI 0 0% 86.11% 23ms 0.54% VecNorm_MPI_Default.constprop.0 0 0% 86.11% 22ms 0.51% std::vector::_M_assign_aux (inline) 0 0% 86.11% 22ms 0.51% std::vector::assign (inline)