File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12621ms, 85.03% of 14843ms total Dropped 777 nodes (cum <= 74.22ms) flat flat% sum% cum cum% 0 0% 0% 14830ms 99.91% __libc_start_call_main 0 0% 0% 14830ms 99.91% __libc_start_main_impl 0 0% 0% 14830ms 99.91% _start 0 0% 0% 14827ms 99.89% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14827ms 99.89% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14827ms 99.89% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14827ms 99.89% main 0 0% 0% 14784ms 99.60% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14784ms 99.60% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14784ms 99.60% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 2ms 0.013% 0.013% 14753ms 99.39% AbstractCardiacProblem::Solve 2ms 0.013% 0.027% 11272ms 75.94% AbstractDynamicLinearPdeSolver::Solve 88ms 0.59% 0.62% 8915ms 60.06% AbstractCardiacTissue::SolveCellSystems 80ms 0.54% 1.16% 5396ms 36.35% AbstractCardiacCell::ComputeExceptVoltage 87ms 0.59% 1.74% 4773ms 32.16% AbstractOneStepIvpOdeSolver::InternalSolve 142ms 0.96% 2.70% 4090ms 27.56% EulerIvpOdeSolver::CalculateNextYValue 930ms 6.27% 8.97% 3905ms 26.31% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1831ms 12.34% 21.30% 3549ms 23.91% __GI___exp 0 0% 21.30% 3421ms 23.05% MonodomainProblem::WriteOneStep 2ms 0.013% 21.32% 3234ms 21.79% H5Dwrite 3ms 0.02% 21.34% 3224ms 21.72% Hdf5DataWriter::PutVector 5ms 0.034% 21.37% 3201ms 21.57% H5D__write 73ms 0.49% 21.86% 2830ms 19.07% AbstractCardiacTissue::UpdateCaches (inline) 787ms 5.30% 27.16% 2691ms 18.13% CellLuoRudy1991FromCellML::GetIIonic 0 0% 27.16% 1922ms 12.95% H5D__chunk_collective_write 25ms 0.17% 27.33% 1922ms 12.95% H5F_set_coll_metadata_reads 14ms 0.094% 27.43% 1725ms 11.62% H5FD_s3comms_uriencode 1374ms 9.26% 36.68% 1640ms 11.05% __ieee754_exp_fma 2ms 0.013% 36.70% 1627ms 10.96% LinearSystem::Solve 0 0% 36.70% 1495ms 10.07% KSPSolve 1ms 0.0067% 36.70% 1495ms 10.07% KSPSolve_Private 3ms 0.02% 36.72% 1488ms 10.02% KSPSolve_CG 51ms 0.34% 37.07% 1385ms 9.33% 2ms 0.013% 37.08% 1381ms 9.30% H5F_block_write 2ms 0.013% 37.09% 1379ms 9.29% H5PB_write 1ms 0.0067% 37.10% 1376ms 9.27% H5F__accum_write 2ms 0.013% 37.12% 1375ms 9.26% H5FD_write 2ms 0.013% 37.13% 1269ms 8.55% H5D__mpio_select_write 1ms 0.0067% 37.14% 1155ms 7.78% PMPI_File_write_at_all 9ms 0.061% 37.20% 1140ms 7.68% H5D__chunk_cacheable 1135ms 7.65% 44.84% 1135ms 7.65% __GI_pwritev64 3ms 0.02% 44.86% 1026ms 6.91% std::pow (inline) 97ms 0.65% 45.52% 1023ms 6.89% __pow 344ms 2.32% 47.83% 957ms 6.45% H5S_select_iterate 84ms 0.57% 48.40% 925ms 6.23% __ieee754_pow_fma 0 0% 48.40% 851ms 5.73% PCApply 1ms 0.0067% 48.41% 848ms 5.71% PCApply_BJacobi_Singleblock 0 0% 48.41% 817ms 5.50% KSPSolve_PREONLY 4ms 0.027% 48.43% 814ms 5.48% MatSolve 0 0% 48.43% 814ms 5.48% PCApply_ICC 802ms 5.40% 53.84% 810ms 5.46% MatSolve_SeqSBAIJ_1_NaturalOrdering 312ms 2.10% 55.94% 708ms 4.77% MonodomainSolver::SetupLinearSystem 1ms 0.0067% 55.95% 622ms 4.19% KSP_PCApply.lto_priv.7 73ms 0.49% 56.44% 619ms 4.17% H5D__chunk_set_sizes 3ms 0.02% 56.46% 571ms 3.85% MatMult 566ms 3.81% 60.27% 568ms 3.83% MatMult_SeqAIJ 477ms 3.21% 63.48% 477ms 3.21% log_inline (inline) 54ms 0.36% 63.85% 430ms 2.90% H5S_mpio_space_type 215ms 1.45% 65.30% 377ms 2.54% CellLuoRudy1991FromCellML::VerifyStateVariables 315ms 2.12% 67.42% 327ms 2.20% exp_inline (inline) 0 0% 67.42% 298ms 2.01% KSPConvergedDefault 0 0% 67.42% 230ms 1.55% KSP_PCApply 76ms 0.51% 67.93% 222ms 1.50% TimeStepper::TimeStepper 219ms 1.48% 69.41% 219ms 1.48% [libchaste_heart.so] 168ms 1.13% 70.54% 213ms 1.44% top12 (inline) 43ms 0.29% 70.83% 210ms 1.41% __GI___libc_malloc 7ms 0.047% 70.88% 200ms 1.35% H5VM_chunk_index 4ms 0.027% 70.90% 197ms 1.33% Hdf5DataWriter::PutUnlimitedVariable 157ms 1.06% 71.96% 194ms 1.31% _int_malloc 46ms 0.31% 72.27% 191ms 1.29% AbstractCardiacCell::SetVoltage (partial-inline) 42ms 0.28% 72.55% 183ms 1.23% __GI___libc_free 9ms 0.061% 72.61% 183ms 1.23% ompi_datatype_destroy 2ms 0.013% 72.63% 174ms 1.17% MPI_Type_free 163ms 1.10% 73.72% 163ms 1.10% ddot_ 4ms 0.027% 73.75% 163ms 1.10% ompi_datatype_create 160ms 1.08% 74.83% 160ms 1.08% __memcpy_avx_unaligned_erms 157ms 1.06% 75.89% 157ms 1.06% TimeStepper::CalculateNextTime 5ms 0.034% 75.92% 156ms 1.05% ompi_info_register_framework_params 41ms 0.28% 76.20% 155ms 1.04% ompi_datatype_release_args 147ms 0.99% 77.19% 147ms 0.99% asuint64 (inline) 119ms 0.8% 77.99% 145ms 0.98% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 105ms 0.71% 78.70% 142ms 0.96% AbstractOneStepIvpOdeSolver::Solve 48ms 0.32% 79.02% 140ms 0.94% _int_free 28ms 0.19% 79.21% 139ms 0.94% H5S_set_version 102ms 0.69% 79.90% 126ms 0.85% AbstractParameterisedSystem::SetAnyVariable 1ms 0.0067% 79.90% 123ms 0.83% PMPI_File_set_view 115ms 0.77% 80.68% 115ms 0.77% __ieee754_log_fma 70ms 0.47% 81.15% 113ms 0.76% TimeStepper::AdvanceOneTimeStep 45ms 0.3% 81.45% 111ms 0.75% H5VM_array_calc 0 0% 81.45% 111ms 0.75% VecDuplicate 9ms 0.061% 81.51% 111ms 0.75% VecDuplicate_MPI 75ms 0.51% 82.02% 106ms 0.71% AbstractParameterisedSystem::GetAnyVariable 1ms 0.0067% 82.03% 105ms 0.71% VecNorm 46ms 0.31% 82.34% 104ms 0.7% H5S_hyper_add_span_element 104ms 0.7% 83.04% 104ms 0.7% H5VM_chunk_index_scaled 46ms 0.31% 83.35% 102ms 0.69% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.02% 83.37% 102ms 0.69% VecTDot 2ms 0.013% 83.38% 99ms 0.67% H5D__chunk_allocated 0 0% 83.38% 98ms 0.66% VecTDot_Seq 0 0% 83.38% 98ms 0.66% VecXDot_Seq_Private.constprop.0 0 0% 83.38% 97ms 0.65% std::vector::_M_assign_aux (inline) 0 0% 83.38% 97ms 0.65% std::vector::assign (inline) 1ms 0.0067% 83.39% 95ms 0.64% ompi_datatype_duplicate 1ms 0.0067% 83.39% 93ms 0.63% H5D__select_write 0 0% 83.39% 93ms 0.63% VecNorm_Seq 2ms 0.013% 83.41% 92ms 0.62% H5Dgather 91ms 0.61% 84.02% 91ms 0.61% H5VM_array_offset_pre 4ms 0.027% 84.05% 89ms 0.6% H5D__contig_fill 26ms 0.18% 84.22% 88ms 0.59% AbstractCardiacCell::GetVoltage (inline) 1ms 0.0067% 84.23% 88ms 0.59% PMPI_Type_create_resized 8ms 0.054% 84.28% 86ms 0.58% std::__copy_move::__copy_m (inline) 0 0% 84.28% 86ms 0.58% std::__copy_move_a (inline) 0 0% 84.28% 86ms 0.58% std::__copy_move_a1 (inline) 0 0% 84.28% 86ms 0.58% std::__copy_move_a2 (inline) 0 0% 84.28% 86ms 0.58% std::copy (inline) 1ms 0.0067% 84.29% 85ms 0.57% H5VM_opvv 0 0% 84.29% 84ms 0.57% H5D__contig_write 1ms 0.0067% 84.30% 80ms 0.54% PMPI_File_write_at 28ms 0.19% 84.48% 80ms 0.54% __libc_calloc 79ms 0.53% 85.02% 79ms 0.53% [libm.so.6] 2ms 0.013% 85.03% 78ms 0.53% opal_datatype_create_desc